Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1988 ATGGTTTCACTGTCTCATCAGATTGTCGTTCCCAGCACCCACAAGTTGAAACCCATTGTTGCTCTTTTTCACTATCCCTCTTCATGTTCCATTGCAGACCCCAGCAACCTCGCTGCCCTCCTACAAGGCAACATTCCACGTTCTCACCTTCTCCAAATCCATGCACGCATTTTTCAACTTGGCGCACACCAAGACAACCTCATAGCCACGCGCCTCATTGGGCACTACCCATCACGCATTGCTCTTCGTGTCTTTCACCATCTCCATAATCCAAACATCTTCCCTTTCAACGCCATCATCAGAGTCCTCGCCCAAGAGGGTCACTTTTTTCACGCTCTTTCCGTCTTCAACTATTTGAAACGACGCTCACTTTCGCCCAACGACTTAACCTTCTCTTTCCTCTTTAAGGCATGCTTTCGGACCAAAGATGTCCGTTACGTCGAACAGATTCATGCCCACATTCAGAAGATGGGTTTCCTCTCTGACTCTTTTGTTTGCAATGGCTTGGTTTCTGTGTATGCCAAAGGCTTTAACAATCTGGTATCTGCCCGTAAAGTGTTTGATGAAATTCCTGACAATAGGGTTGTTAACTGTTGGACTAACTTGATCACTGGTTTTGCTCAGTCTGGTCAGAGTGAGGAGGCTTTGCAGCTTTTCCATGTGATGGTTAGGCAGAACTTGCTTCCCCAAAGTGATACTATGGTCAGTGTTTTATCAGCTTGTTCTAGCCTTGAGATGCCAAAAATTGAGAAATGGGTTAACGTTTTTTCAGAATCACTTGATGATAACGTGAGTACTAGAGAAACTTGCCATGATTCAGTTAACACGGTGCTGGTTTATTTGTTTGGTAAATGGGGGAGAATTGAAAAGAGTAGAGAAGGGTTTGACCGAATTTCTGCAACAGGAAAAAGAAGTGTGGTTCCTTGGAATGCAATGATTAGTGCATACGTTCAAAATGGTTGCCATGTGGAGGGTTTAAGTCTTTTCCGCATGATGGTAGAAGCAGAAACCACTAGACCTAACCATATCACAATGGTTAGTGTGCTTTCAGCTTGTGCTCAAATTGGCGATTTGTGTTTTGGTAGTTGGGTTCACGAGTATCTAATATCTATCGGACATAGAGACACTATTGGGTCAAACCAAATTCTTGCGACATCTTTAATTGACATGTATTCTAAATGTGGCAATTTGGATAAGGCAAAGGAAGTTTTTGAGCATACAGTCTCCAAAGATGTTGTCTTATTCAATGCGATGATCATGTGTCTTGCAGTATATGGTGAAGGAGAGGATGCATTGAGACTCTTCTACAAAATGCCAGAATTTGGCTTACAACCCAATGCGGGAACATTTCTCGGTGCTTTAAGTGCATGCAGTCACTCTGGGTTGCTGGCAAGAGGACGCCAGATATTCAGAGAACTGACCCTTTCCACTACTCTTACATTGGAACATTGTGCTTGTTATATTGATCTCCTTGCAAGAGTAGGATGCATAGAAGAAGCTATCGAGGTTGCGACTTCCATGCCTTTCAAGCCTAACAATTTTGTCTGGGGTGCTTTGCTTGGAGGCTGCTTGCTCCATTCTAGAGTTGAGTTGGCCCAAGAGGTTTCCAGGAGGCTTGTTGAAGTAGACCCAGATAATTCTGCAGGCTATGTTATGTTGGCTAATGCACTTGCATCTGATCATCAATGGAGTGATGTCTCAAAGATGCGTCTGGAAATGAAAGAGAAGGGGGTCAAGAAGCAACCAGGAAGTAGTTGGATTACTGTGGATGGAGTTGTACATGAATTTCTTGTTGGCTGTTTGTCACATCCTAATATTGAGGGCATATATGATACATTGGCTGGATTGGTGAAGCATATGAAAGTAGCAAGCCATTTTCACCTTGTGTGCTGTTGTTAG 1899 0.435 MVSLSHQIVVPSTHKLKPIVALFHYPSSCSIADPSNLAALLQGNIPRSHLLQIHARIFQLGAHQDNLIATRLIGHYPSRIALRVFHHLHNPNIFPFNAIIRVLAQEGHFFHALSVFNYLKRRSLSPNDLTFSFLFKACFRTKDVRYVEQIHAHIQKMGFLSDSFVCNGLVSVYAKGFNNLVSARKVFDEIPDNRVVNCWTNLITGFAQSGQSEEALQLFHVMVRQNLLPQSDTMVSVLSACSSLEMPKIEKWVNVFSESLDDNVSTRETCHDSVNTVLVYLFGKWGRIEKSREGFDRISATGKRSVVPWNAMISAYVQNGCHVEGLSLFRMMVEAETTRPNHITMVSVLSACAQIGDLCFGSWVHEYLISIGHRDTIGSNQILATSLIDMYSKCGNLDKAKEVFEHTVSKDVVLFNAMIMCLAVYGEGEDALRLFYKMPEFGLQPNAGTFLGALSACSHSGLLARGRQIFRELTLSTTLTLEHCACYIDLLARVGCIEEAIEVATSMPFKPNNFVWGALLGGCLLHSRVELAQEVSRRLVEVDPDNSAGYVMLANALASDHQWSDVSKMRLEMKEKGVKKQPGSSWITVDGVVHEFLVGCLSHPNIEGIYDTLAGLVKHMKVASHFHLVCCC 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1988 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Aed1g1988 632 Gene3D Tetratricopeptide repeat domain 275 360 IPR011990 GO:0005515
Aed1g1988 632 Pfam PPR repeat family 196 242 IPR002885 -
Aed1g1988 632 Pfam PPR repeat family 91 139 IPR002885 -
Aed1g1988 632 SUPERFAMILY TPR-like 191 568 IPR011990 GO:0005515
Aed1g1988 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Aed1g1988 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Aed1g1988 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Aed1g1988 632 Pfam PPR repeat 385 406 IPR002885 -
Aed1g1988 632 Pfam PPR repeat 413 443 IPR002885 -
Aed1g1988 632 Pfam PPR repeat 308 334 IPR002885 -
Aed1g1988 632 TIGRFAM PPR: pentatricopeptide repeat domain 385 412 IPR002885 -
Aed1g1988 632 TIGRFAM PPR: pentatricopeptide repeat domain 413 447 IPR002885 -
Aed1g1988 632 TIGRFAM PPR: pentatricopeptide repeat domain 309 335 IPR002885 -
Aed1g1988 632 TIGRFAM PPR: pentatricopeptide repeat domain 198 229 IPR002885 -
Aed1g1988 632 TIGRFAM PPR: pentatricopeptide repeat domain 96 127 IPR002885 -
Aed1g1988 632 PANTHER OS01G0913400 PROTEIN-RELATED 40 624 - -
Aed1g1988 632 Pfam E motif 526 587 IPR046848 -
Aed1g1988 632 Gene3D Tetratricopeptide repeat domain 374 597 IPR011990 GO:0005515
Aed1g1988 632 Gene3D Tetratricopeptide repeat domain 48 274 IPR011990 GO:0005515
Aed1g1988 632 PANTHER - 40 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1988 Aed-Chr1 16832460 16834358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1988 66 621 Glycoside Hydrolase AT3G49170 31.028 3.07e-82 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1988 - - gmx:100807506 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1988 1 16832460 16834358 Aed1g1988 1 16832460 16834358 ECH