Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1954 ATGCAAAACCTGAATTTCCTCTACCTAACCATATTTTCCCTCTCTTTTATCAAATTCAACTACGTCCTAGTCCAAGGCCTGACCTCAGGCTCAGATATTGCAGCCCTGAAAGCCTTCAAGGGGTCAATCAAAGCCTCATCCATCACACCCTGGTCATGCCTCGCCTCATGGAACTTCACAACCGACCCATGCTTACTCCCTCGCCGCACCTCCTTCATCTGCGGCCTCACCTGCACCCCTGACTCAAAAAGAATCAACCAAATCACTCTCGACCCAGCTGGGTACTCAGGCACACTCACCCCACTAATCTCTCAACTCACTCAACTCACCACACTAGACCTCGCTGAAAACAACTTCTTCGGCCCAATACCCGCTTCAATTTCCTCACTCTACAACCTCCAAACCTTAACCCTCCGATCCAACTCCTTCTCAGGTACAATCCCTACCTCCATAACCACTCTCAAATCACTCCAATCTCTCGACCTTGCACACAACTCCCTCTATGGGTATCTCCCAAACTCAATGAACTCCCTCGCCACACTCCGCAGGCTCGATCTCAGCTTCAACAAACTAACCGGTTCGATCCCGAAGCTCCCACCCAACTTGCTTGAACTCGCGATCAAGGCCAATTCACTATCTGGGCCTCTCCAAAAACAGAGCTTTGAAGGAATGAGCCAGCTGGAAGTGGTGGAGCTCAGCGAGAACGCGCTCACCGGTACGGTGGAGTCGTGGTTCTTCCTTTTACCGTCGCTGCAGCAAGTGGACTTGGCCAACAACACATTCACGGGGGTGCAGATCTCGAGGCCAGTCGCGGCGCGTGGGGAAGGAAGCATCAGCAACAGCAGCAGTAGCGGTAACAGCAACCTGGTCGCTCTGAACCTCGGGTTTAACAGAATCCGAGGCTACGCGCCCGCGAATCTCGCAGCGTATCCCTCGCTGTCGTTCCTGTCGATTCGCTACAACGCGCTGCGTGGCGTGATCCCGCTGGAGTACGGGCAAATCAAGACGATGAAGAGGCTGTTCCTGGACGGGAACTTCCTCGTGGGGAAGCCGCCGGCGGGGCTGGTGGAGGCCGGCACGGCGGTTTCCGGCAGCTTGGGGGATAATTGTCTGCAGGCGTGTCCAGGGTCGTCGCAGCTGTGCTCGCCAGCTCAGAAACCTACCTCTGTTTGCAAGCAAGCCTACCGTGGTAGACCAACACCGTAA 1206 0.5489 MQNLNFLYLTIFSLSFIKFNYVLVQGLTSGSDIAALKAFKGSIKASSITPWSCLASWNFTTDPCLLPRRTSFICGLTCTPDSKRINQITLDPAGYSGTLTPLISQLTQLTTLDLAENNFFGPIPASISSLYNLQTLTLRSNSFSGTIPTSITTLKSLQSLDLAHNSLYGYLPNSMNSLATLRRLDLSFNKLTGSIPKLPPNLLELAIKANSLSGPLQKQSFEGMSQLEVVELSENALTGTVESWFFLLPSLQQVDLANNTFTGVQISRPVAARGEGSISNSSSSGNSNLVALNLGFNRIRGYAPANLAAYPSLSFLSIRYNALRGVIPLEYGQIKTMKRLFLDGNFLVGKPPAGLVEAGTAVSGSLGDNCLQACPGSSQLCSPAQKPTSVCKQAYRGRPTP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1954 401 Gene3D Ribonuclease Inhibitor 30 199 IPR032675 -
Aed1g1954 401 SMART LRR_typ_2 106 130 IPR003591 -
Aed1g1954 401 SMART LRR_typ_2 178 205 IPR003591 -
Aed1g1954 401 SMART LRR_typ_2 224 247 IPR003591 -
Aed1g1954 401 SMART LRR_typ_2 248 269 IPR003591 -
Aed1g1954 401 SMART LRR_typ_2 154 177 IPR003591 -
Aed1g1954 401 PRINTS Leucine-rich repeat signature 157 170 - -
Aed1g1954 401 PRINTS Leucine-rich repeat signature 178 191 - -
Aed1g1954 401 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 400 - -
Aed1g1954 401 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 400 - -
Aed1g1954 401 Gene3D Ribonuclease Inhibitor 200 270 IPR032675 -
Aed1g1954 401 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Aed1g1954 401 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Aed1g1954 401 Gene3D Ribonuclease Inhibitor 271 393 IPR032675 -
Aed1g1954 401 Pfam Leucine Rich Repeat 108 130 IPR001611 GO:0005515
Aed1g1954 401 ProSiteProfiles Leucine-rich repeat profile. 180 202 IPR001611 GO:0005515
Aed1g1954 401 SUPERFAMILY L domain-like 70 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1954 Aed-Chr1 16660405 16666789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1954 95 355 Receptor kinase-like Gene Family AT3G28890 35.636 1.79e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1954 - - gmx:100801713 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1954 1 16660405 16666789 Aed1g1954 1 16660405 16666789 ECH