Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1814 ATGAGTCAAAGGGGTTTAATATACAGCTTTGTTGCCAAAGGAACTGTTGTTTTAGCAGAGCACACACAATATACGGGGAATTTCAGTACCATTGCTGTTCAGTGCCTGCAGAAGCTGCCTTCAAATAGCAGCAAATACACGTATTCCTGTGATGGTCACACCTTTAACTTCCTCATCGACAATGGATTTGTTTTCCTTGTTGTTGCTGATGAATCGGTTGGAAGGAGTGTTCCTTTTGTATTTCTTGAACGGGTGAAGGATGACTTTATGAAGCGCTATGGTGCTAGCATTAAGAATGATGGCGTCCATCCACTCGCTGATGATGACGATGATGACAATTTGTTTGAGGACAGATTTAGCATAGCATATAATCTCGATAGAGAATTTGGACCAGCACTCAAGGAGCATATGCAGTATTGCATGAACCATCCAGAAGAAATGAGTAAACTATCAAAATTGAAGGCTCAAATAACTGAGGTCAAGGGGATAATGATGGACAATATTGAGAAGGTATATGATACTAGTTTATCTGTGGATGAGCTGTTCTATTGTTTGCGTGTGAAATCATATAGGGTTTGCAAGTTGGTTGAGGACTTTGATGCTCTTGTTGGAACCATGGTATTCAAGGACCTTCTCTTGTTACTTAACAAGAAGAGGAGAAGATTTTCATCACATCTTAACTGTCATGGAACTGCATTTGTACTTGCTGTTTTGAAGGTTTTGGATCGTGGAGAGAAGATTGAACTGCTGGTGGACAAAACAGAAAACTTGCAGTTCCAGCTTCCAGAGGCAGGGCAGGCAGCTGAGAAGGAAGATGTGGCTGCAGAATCTCCAAATGAAGCTGATGGTGGGAGGAGGAGTCCTTATCTTAATTATAATTCTGTGGGTTATTGCTTGTGGGGGTTTCAAATGTTGATGGAGCCATAA 927 0.4132 MSQRGLIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKYTYSCDGHTFNFLIDNGFVFLVVADESVGRSVPFVFLERVKDDFMKRYGASIKNDGVHPLADDDDDDNLFEDRFSIAYNLDREFGPALKEHMQYCMNHPEEMSKLSKLKAQITEVKGIMMDNIEKVYDTSLSVDELFYCLRVKSYRVCKLVEDFDALVGTMVFKDLLLLLNKKRRRFSSHLNCHGTAFVLAVLKVLDRGEKIELLVDKTENLQFQLPEAGQAAEKEDVAAESPNEADGGRRSPYLNYNSVGYCLWGFQMLMEP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1814 308 CDD R-SNARE 149 260 - -
Aed1g1814 308 SUPERFAMILY SNARE fusion complex 143 181 - -
Aed1g1814 308 Gene3D - 148 263 - -
Aed1g1814 308 ProSiteProfiles Longin domain profile. 6 133 IPR010908 -
Aed1g1814 308 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 727 237 261 - -
Aed1g1814 308 SUPERFAMILY SNARE-like 6 98 IPR011012 -
Aed1g1814 308 Gene3D Longin domain 1 147 - -
Aed1g1814 308 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 727 1 177 - -
Aed1g1814 308 Pfam Regulated-SNARE-like domain 32 97 IPR010908 -
Aed1g1814 308 PANTHER SNARE PROTEINS 1 177 - -
Aed1g1814 308 PANTHER SNARE PROTEINS 237 261 - -
Aed1g1814 308 CDD Longin 7 140 IPR010908 -
Aed1g1814 308 SMART Longin_2 31 111 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1814 Aed-Chr1 15551274 15556562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1814 239 260 Miscellaneous Gene Families AT3G54300 100.000 1.31e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1814 K08511 - gmx:100777402 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1814 1 15551274 15556562 Aed1g1814 1 15551274 15556562 ECH