Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0734 ATGTGGAGAGATCCGGGAGTTTCAGCTGATTCTTTCTATGAAATCCGCCCCGAATGCACCGATGTTCCCGTTACTCGATTTAAGATCAAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCATGCTGCATTTACTCCAGACGGGTATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGTGGGGGAGTCCATCCATCAATTAAGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAAATAAGACAACGCAGAAGAATGCAATATGCCACATTGAAAGAAGAATGCCGTCAATTATTTCCTCTTGTTGGAAGTGGTAGATTTGTCACAGCACCTGTTATTACTGAAGATGGTCAGCCAATTCAAGATCCATTGGTTCTGAAAGAAACAAGTCCAGCCAGAGGATTGGCTGTACATCCTCAATATGATAATAGTCCTTCAAGTATGGATGCTGCAAATAATTTAGAAAAGGTGACAGACAAGACAGTAATCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTTGTTCGCACTGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACTTGTCGAAACTATGGGACATTCTTGCTGTTTACGCTTGGATAGATAAGGATGTTGGCTATGGTCAAGGAATGGGTGACCTATGCTCCCCTATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTAAACTAGTTTCTATTAGTAGATTTTTTAGACATTCAACTTCATCTCAGTTTCTTACGATTTGTGTTCTTCAATTTGTAAAGCGAGGCAATTTTAGATGCACCGAGAGCTCTGTTGGCGTGTCAGCTCAACTAAGTAATTTGGCTTCAGTTACTCAAGTAATTGATCCAAAACTTCATAAACATATAGAGCATCTTGGTGGAGGTGATTACCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGCGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCCGACTTGTTCTTGATGTATGAAATGCCGCAATCGGCTTCTGGAAAAGCCGAGGGCTCGAAAGGAAAAACAAAGTCAATACGTCAGTGTGGAAAGTATGAGAGAGAAAATTTGAAGAGTAGATCAAAGAATTCTGAAGCTCCTCTTCCTATATCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTACAAAACTACTACAAGAAGCTCGGGGCTTGGATGATGTTGTCAAGATTTTGAATGACATGACGGGTAATCTAGATGCCAAAAAAGCTTGCATTGGGGCTTTGAAACTTCACAAGAAATATTTGAGAAAGGCAGAGACTGATTATAGTGATCATTTCTTCAAAGATGTAGTGGAGGAATATGACCATGTTGCATGGTACATGCCAGTGCTTAGTGTCACTGCTAAATTTGAATATCAATTGCCATCAACACTCTATAGCCAAGAAACCCTAAGCACCAAATACATCCAAATATCCAATGATTTTTTTGTAATATGTTGTATGGTACATGTGTTGTTGCTCCCTGGGAGACAATAA 1620 0.3957 MWRDPGVSADSFYEIRPECTDVPVTRFKIKAGKTLSARKWHAAFTPDGYLDIGKTLSRIYRGGVHPSIKGEVWEFLLGCYDPKSTFEERDQIRQRRRMQYATLKEECRQLFPLVGSGRFVTAPVITEDGQPIQDPLVLKETSPARGLAVHPQYDNSPSSMDAANNLEKVTDKTVIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMGDLCSPMIILLDDEADAFWCFERLMRRLKLVSISRFFRHSTSSQFLTICVLQFVKRGNFRCTESSVGVSAQLSNLASVTQVIDPKLHKHIEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPQSASGKAEGSKGKTKSIRQCGKYERENLKSRSKNSEAPLPISVFLVASVLKDKSTKLLQEARGLDDVVKILNDMTGNLDAKKACIGALKLHKKYLRKAETDYSDHFFKDVVEEYDHVAWYMPVLSVTAKFEYQLPSTLYSQETLSTKYIQISNDFFVICCMVHVLLLPGRQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0734 539 Pfam Rab-GTPase-TBC domain 157 354 IPR000195 -
Aed1g0734 539 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 294 462 IPR035969 -
Aed1g0734 539 ProSiteProfiles TBC/rab GAP domain profile. 63 356 IPR000195 -
Aed1g0734 539 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 288 467 - -
Aed1g0734 539 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 263 - -
Aed1g0734 539 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 38 260 IPR035969 -
Aed1g0734 539 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 288 467 - -
Aed1g0734 539 SMART tbc_4 60 379 IPR000195 -
Aed1g0734 539 Gene3D - 292 476 - -
Aed1g0734 539 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 263 - -
Aed1g0734 539 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 159 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0734 Aed-Chr1 8405474 8412659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0734 - - gmx:100805808 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0734 1 8405474 8412659 Aed1g0734 1 8405474 8412659 ECH