Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0629 ATGGGAGAGCGTTGTAGACACTTTTCCATTGAGGAATTGCCATCACACTTGGTTTTAGAAATTCTGTGCTCGGGCAGGCTCAGTGCAATGGACCTTGTTTCTTTAGAATTGACTTCCAAAGCATTTGGTGGCAGTCATGGTTTGCACCCTTTCAAGTTCAAGTCATTGGTTGACTTTGCTGCATTTCAATTGTGTGCCTCCCATGTTACCTATGCAAAGATGGGTTTGAATTCTCAGAGGGAGTTGTATGATAGATGTGGAGCAAATTGGAAGCGAGTTTTGAGGTTCTTGCAGTCTGTGGAACAATCCTCTCAGAGGGTCGAGACATCATCAGGCAATATGCAAATAACAACTGGAAAGTATCACACCTTGTTGATCAGTAATTCTTCTGTCTATTCTTGTGGCTCTGGTTTGTGTGGTGTACTTGGTCAAGGGTCTGAAACAACACAGTGTGTAGCATTTACCCGGATTGATTTCCCACCATTGGCACGAGTGGTTCATGTTTCAGCCTCCTTTAACCATGCAGCTTTCCTTACGCAATCTGGAGAGGTATTCACATGCGGAGATAATTCATCTTCTTGCTGTGGGCATAGAGATACAACCCGACCAATTTTCAGGCCACGCCTTGTTGAATCCCTGAAGGGAATTCCTTGCAAACAGGTTGCAGCGGGGCTTAATTTCACAGTCTTCCTCACCAGACAAGGTCATGTTTACACATGTGGAACTAACACACATGGCCAGCTTGGTCATGGTGACACTCAGGACAGGCCAACCCCCAAATTGATTGAAGTCCTTGGCTCTGTTGTTCAGATTGCTGCGGGACCGAGCTATATCTTATCTGTAACAGAAGATGGGGCAGTATACTCCTTTGGATCAGGTGCTAATTTCTGTCTTGGCCACGGTGAGCAGCACGATGAGTTGCAGCCGCGTGCTATACAGAAATTCAGAAGGAAAGGTATTCATATTGTCCGTGTATCTGCTGGGGATGAGCATGCAGTGGCACTTGATTCAAATGGATTTGTATATACATGGGGCAAGGGATACTGTGGTGCTTTAGGCCATGGGGATGAGATTGAGAAGACAACTCCAGAGTTGTTGACTAGTCTTAAGAATCAATTGGCTGTTCAGATCTGTGCAAGGAAGAGGAAAACATTTGTTCTAGTTGATTCTGGTTCAGTATATGGCTTTGGCTCCATGGGATTTGGCAGCCTTGGATTCCTGGATAGAAGGGTATCTGACAAAGTATTGAAACCTAGAATCTTAGATACCTTAAGAGCTCATCATGTTTCTCAAATTAGCACTGGCTTGTACCACACTGTGGTGATCACTAGCAGGGGACAGATATTTGGCTTTGGAGACAATGAAAGAGCACAACTTGGTCATGACACATTAAGAAGCTGCCTTGAGCCTACTCAAATTTTCATTAAAGATACATCTGAAGATGTAGAAAGCATCTGA 1458 0.4438 MGERCRHFSIEELPSHLVLEILCSGRLSAMDLVSLELTSKAFGGSHGLHPFKFKSLVDFAAFQLCASHVTYAKMGLNSQRELYDRCGANWKRVLRFLQSVEQSSQRVETSSGNMQITTGKYHTLLISNSSVYSCGSGLCGVLGQGSETTQCVAFTRIDFPPLARVVHVSASFNHAAFLTQSGEVFTCGDNSSSCCGHRDTTRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTCGTNTHGQLGHGDTQDRPTPKLIEVLGSVVQIAAGPSYILSVTEDGAVYSFGSGANFCLGHGEQHDELQPRAIQKFRRKGIHIVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPELLTSLKNQLAVQICARKRKTFVLVDSGSVYGFGSMGFGSLGFLDRRVSDKVLKPRILDTLRAHHVSQISTGLYHTVVITSRGQIFGFGDNERAQLGHDTLRSCLEPTQIFIKDTSEDVESI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0629 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 339 390 IPR000408 -
Aed1g0629 485 Pfam Regulator of chromosome condensation (RCC1) repeat 235 275 IPR000408 -
Aed1g0629 485 Pfam Regulator of chromosome condensation (RCC1) repeat 284 335 IPR000408 -
Aed1g0629 485 Pfam Regulator of chromosome condensation (RCC1) repeat 338 379 IPR000408 -
Aed1g0629 485 Pfam Regulator of chromosome condensation (RCC1) repeat 181 231 IPR000408 -
Aed1g0629 485 Gene3D - 282 485 IPR009091 -
Aed1g0629 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 284 IPR000408 -
Aed1g0629 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 234 IPR000408 -
Aed1g0629 485 Pfam Regulator of chromosome condensation (RCC1) repeat 429 457 - -
Aed1g0629 485 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 432 442 IPR000408 -
Aed1g0629 485 SUPERFAMILY RCC1/BLIP-II 124 475 IPR009091 -
Aed1g0629 485 Gene3D - 57 281 IPR009091 -
Aed1g0629 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 485 IPR000408 -
Aed1g0629 485 PANTHER BNAA01G28890D PROTEIN 9 475 - -
Aed1g0629 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 338 IPR000408 -
Aed1g0629 485 PRINTS Chromosome condensation regulator RCC1 signature 441 462 IPR000408 -
Aed1g0629 485 PRINTS Chromosome condensation regulator RCC1 signature 380 398 IPR000408 -
Aed1g0629 485 PRINTS Chromosome condensation regulator RCC1 signature 287 301 IPR000408 -
Aed1g0629 485 PRINTS Chromosome condensation regulator RCC1 signature 184 200 IPR000408 -
Aed1g0629 485 PRINTS Chromosome condensation regulator RCC1 signature 130 146 IPR000408 -
Aed1g0629 485 PRINTS Chromosome condensation regulator RCC1 signature 165 178 IPR000408 -
Aed1g0629 485 PRINTS Chromosome condensation regulator RCC1 signature 271 287 IPR000408 -
Aed1g0629 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 445 IPR000408 -
Aed1g0629 485 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 475 - -
Aed1g0629 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 181 IPR000408 -
Aed1g0629 485 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 325 335 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0629 Aed-Chr1 7596234 7600682 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0629 - - gmx:100782653 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0629 1 7596234 7600682 Aed1g0629 1 7596234 7600682 ECH