Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0584 ATGGTGCTGTTCAGGTGTTTCTCAGTGACACTTTTGCAGTGGTGCTGCTTGGCTTGCTTACTTTGCTTATCACTAGGGCTTAATAACAATAATCAAGCCCTATCCTGTGACCCTCATGATTTATCAGCCCTGAAGGAGTTTGCAGGCAACCTTACAAGTGGCTCTATCATCACAGATTGGTCCAATGACACTGCCTGCTGCAACTGGCTTGGAGTTTTTTGTGATAATGTGACTGATGCTGGTAGAACAGTTGCTAGTAGAGTGACCAAGTTGATCTTGCCTGAAATGGCTCTCAATGGTACAATTTCACCCTCTTTGGCACAGCTAGATCAGCTCAATGTGCTGAATCTTTCATTCAATCACCTTAAAGGTGGAGTGCCTGTGGAATTCTCCAAGTTGAAGCAGTTGAAGTTCCTCGATGTGAGCCATAATATGCTTTCTGGACCTGTTGCTGGAGCTTTTTCTGGTTTGCAATCCATTGAAGTATTGAATATTTCTAGCAATTTACTCTCTGGAGCTCTCTTCCCTTTTGGGGAATTCCCTCATCTCCTTGCTCTCAACGTGAGTAACAATTCATTCACTGGCAGATTCAGTTCACAAATTTGCAATGCTTCCAAGGATCTTCACACCATTGATTTGTCTGCAAATCATTTTGAAGGTGGTCTTGAAGGCTTGGACAACTGCACTACTTCTTCTCTCAAACGTTTGCATTTGGATTCCAATTCATTTACTGGCCCTCTTCCAGATTCATTCTATTCAATGTCAGCCTTGGAGCAGTTCACAGTCTCTGCAAACAATTTATCTGGCCAGTTAAGCAAGCAACTAAGTAAGCTCTCTAACCTAAACACTTTGGTGGTTTGTGCGAACAGGTTTTCTGGGGAACTCCCAAATGTGTTTGAGAACCTTTTGCAGCTAGAAAAATTAGAAGCACATGCCAATTTGTTTTATGGACCCTTGCCTTCCACCTTGGCTTTATGCTCTAAGCTTAAGGTGCTTAATATTCGAAATAATTCCCTGTCAGGGCCAATTGGTCTTAATTTCACTGGCTTGTCGAATCTTCAAACACTTGACCTTGCTACTAATCATCTCATTGGACCCCTTCCTACTTCCCTGTCCCATTGCCGTGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAACTGGTTCTGTCCCTGAAAACTATGCCAACCTTACTTCACTTTTGTTCGTATCATTCTCAAACAACAGCATTGAGAACTTATCTGGGGCACTGTCTGTTCTGCAGCAGTGCAAAAATCTCACCACCCTTATCCTCACTAAGAATTTCCATGGTGAGGAAATTTCAGAAAGTGTGACGGTAGGATTTGAGAGCCTTATGATTTTAGCACTTGGAAATTGTGGTCTTAAAGGCCATATTCCTTCTTGGTTATCCAATTGCAGGAAGTTGGCAGTTCTTGATTTGTCTTGGAACCATTTGAATGGTAGTGTTCCTCCTTGGATTGGTCAGATGGACAGTTTGTTCTATTTGGATTTCTCGAATAATTCTCTCACAGGAGAAATACCAAAAAGTTTGACAGAGTTGAAGGGCCTCATGTGCGCAAAGTGTAATAGAGAAAATCTTGCTGCTTTTGCATTCATTCCTCTCTTTGTTAAGAGAAACACAAGTGTAAGTGGACTGCAATATAACCAGGCCTCAAGTTTCCCTCCTTCAATTCTCTTGAGCAATAACATATTGAGTGGAAATATATGGTCTGAAATTGGTCGATTGAAAGCACTGCATGTATTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAGCACTATTTCAGAGATGAAGAATTTGGAATCATTAGATTTATCATATAATAATCTCTCTGGAGAAATTCCTCCATCATTTAACAACCTCACATTCTTGTCAAAGTTCAGTGTGGCACATAATCGGTTAGGTGGACCAATTCCAACAGGGGGGCAGTTTTTAAGCTTCCCTAGTTCAAGTTTTGAGGGCAACTTGGGGCTTTGTAGGGAAATTGATTCTCCTTGCAAAATTGTCAACAATACAAGTCACAACAATTCTTCTGGTTCTTCCAAAAAACGTGGTAGAAACAATGTCCTTGGCATAACAATCAGTATAGGGGTAGGTCTTGCACTGCTTCTTGCAATTATTCTGCTAAGAATGTCAAGGAGGGATGGCGATAAGCCTGTTGATAACTTTGATGAAGAACTCAATAGCAGGCCACACAGGTTATCTGAAACACTTATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCAGCAATTTGGCAGAAGGATCATGAGAAACAGCTATTGGAGGTGCTTGCCATTGCTTGTAAATGTCTAAACCAAGATCCTAGGCAGAGACCCTCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGTTCTCAACAATGA 2433 0.4106 MVLFRCFSVTLLQWCCLACLLCLSLGLNNNNQALSCDPHDLSALKEFAGNLTSGSIITDWSNDTACCNWLGVFCDNVTDAGRTVASRVTKLILPEMALNGTISPSLAQLDQLNVLNLSFNHLKGGVPVEFSKLKQLKFLDVSHNMLSGPVAGAFSGLQSIEVLNISSNLLSGALFPFGEFPHLLALNVSNNSFTGRFSSQICNASKDLHTIDLSANHFEGGLEGLDNCTTSSLKRLHLDSNSFTGPLPDSFYSMSALEQFTVSANNLSGQLSKQLSKLSNLNTLVVCANRFSGELPNVFENLLQLEKLEAHANLFYGPLPSTLALCSKLKVLNIRNNSLSGPIGLNFTGLSNLQTLDLATNHLIGPLPTSLSHCRELKVLSLARNGLTGSVPENYANLTSLLFVSFSNNSIENLSGALSVLQQCKNLTTLILTKNFHGEEISESVTVGFESLMILALGNCGLKGHIPSWLSNCRKLAVLDLSWNHLNGSVPPWIGQMDSLFYLDFSNNSLTGEIPKSLTELKGLMCAKCNRENLAAFAFIPLFVKRNTSVSGLQYNQASSFPPSILLSNNILSGNIWSEIGRLKALHVLDLSRNNITGTIPSTISEMKNLESLDLSYNNLSGEIPPSFNNLTFLSKFSVAHNRLGGPIPTGGQFLSFPSSSFEGNLGLCREIDSPCKIVNNTSHNNSSGSSKKRGRNNVLGITISIGVGLALLLAIILLRMSRRDGDKPVDNFDEELNSRPHRLSETLMKSENKEQEIFDPAIWQKDHEKQLLEVLAIACKCLNQDPRQRPSIEVVVSWLDSVRFDGSQQ 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0584 810 ProSiteProfiles Leucine-rich repeat profile. 609 631 IPR001611 GO:0005515
Aed1g0584 810 Gene3D Ribonuclease Inhibitor 39 153 IPR032675 -
Aed1g0584 810 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 167 - -
Aed1g0584 810 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 621 751 - -
Aed1g0584 810 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 287 442 - -
Aed1g0584 810 SUPERFAMILY RNI-like 231 524 - -
Aed1g0584 810 Pfam Leucine rich repeat 90 146 IPR001611 GO:0005515
Aed1g0584 810 Pfam Leucine rich repeat 585 644 IPR001611 GO:0005515
Aed1g0584 810 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515
Aed1g0584 810 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 177 284 - -
Aed1g0584 810 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 565 624 - -
Aed1g0584 810 SUPERFAMILY L domain-like 60 318 - -
Aed1g0584 810 Gene3D Transferase(Phosphotransferase) domain 1 712 809 - -
Aed1g0584 810 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 454 522 - -
Aed1g0584 810 SUPERFAMILY L domain-like 552 686 - -
Aed1g0584 810 Pfam Leucine Rich repeat 472 488 IPR001611 GO:0005515
Aed1g0584 810 Pfam Leucine rich repeat N-terminal domain 38 75 IPR013210 -
Aed1g0584 810 Gene3D Ribonuclease Inhibitor 229 346 IPR032675 -
Aed1g0584 810 PRINTS Leucine-rich repeat signature 586 599 - -
Aed1g0584 810 PRINTS Leucine-rich repeat signature 607 620 - -
Aed1g0584 810 SMART LRR_typ_2 109 132 IPR003591 -
Aed1g0584 810 SMART LRR_typ_2 607 630 IPR003591 -
Aed1g0584 810 SMART LRR_typ_2 398 421 IPR003591 -
Aed1g0584 810 SMART LRR_typ_2 473 497 IPR003591 -
Aed1g0584 810 SMART LRR_typ_2 583 606 IPR003591 -
Aed1g0584 810 SMART LRR_typ_2 278 301 IPR003591 -
Aed1g0584 810 SMART LRR_typ_2 350 374 IPR003591 -
Aed1g0584 810 SMART LRR_typ_2 133 156 IPR003591 -
Aed1g0584 810 PANTHER PHYTOSULFOKINE RECEPTOR 2 757 803 - -
Aed1g0584 810 Gene3D Ribonuclease Inhibitor 347 685 IPR032675 -
Aed1g0584 810 PANTHER PHYTOSULFOKINE RECEPTOR 2 621 751 - -
Aed1g0584 810 PANTHER PHYTOSULFOKINE RECEPTOR 2 287 442 - -
Aed1g0584 810 PANTHER PHYTOSULFOKINE RECEPTOR 2 454 522 - -
Aed1g0584 810 PANTHER PHYTOSULFOKINE RECEPTOR 2 177 284 - -
Aed1g0584 810 PANTHER PHYTOSULFOKINE RECEPTOR 2 565 624 - -
Aed1g0584 810 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 757 803 - -
Aed1g0584 810 Gene3D Ribonuclease Inhibitor 154 228 IPR032675 -
Aed1g0584 810 PANTHER PHYTOSULFOKINE RECEPTOR 2 34 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0584 Aed-Chr1 7297742 7300915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0584 17 723 Miscellaneous Gene Families AT1G17240 38.759 1.63e-148 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0584 - - gmx:100807582 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0584 1 7297742 7300915 Aed1g0584 1 7297742 7300915 ECH