Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0555 ATGAGAACCATGTCAAAGACAAAGGTAGCAGCAGCAGCATGTTTCACTTTCTTTGCTTTTTTAGCAGCACTACTTCATGCTGAAGGCCGTTCTCTTCGCCCCACTAGTGTTGTTTCTGATGGTGTTGATATTTTTCAACCTCAAGAGTCTTATCTACAACTCAAGGACCAAACGGTTTCTTCTTCTGGTGATGAGAAATACTGTAAACAAATGTACGGTTTCTTGCCATGTTCCAACAACATACTTGGCCATCTCTTCCTCATTTTGGTTTATGAGTACTTGCTGTTCCATGGAGAGTCATATTTAGCCGCTGGGGGTGAGCAAATTTTCAAGATTCTTGGCCCTGGTGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGTGCTGTTCCAGAGTCCTTAATTCTTCTTGAGTATGCTTCCACTGGTGTTGGTTTGTTGGCTGGATCATCCATCATGCTTCTGACAGTAGTGTGGGGTACCTGTGTTATCGTTGGCAAGCAGAAGTTGAAAAATGATTCTAACATTGGTGACTTAAATTCATCAAGTGGAGGAATAAAAGAATCACTAACTGGCTATGGCATCACTATGGATGTAGATACTAGAAAGATGGCAAGAATCATGGTTTTTTCAGTTATACCACTCCTCATAATGCAGATTCCAAATTTGTTCAACTTCTCTTCTACACCACGCAATGTGACCTTGATGGTTTCTCTTACAGTTGCTGTTGCTTTTCTTATCTCATACTTCATTTACCAGATTTTTAAACCCCAGATAGAGAAAACAAGGCTGGAGTATATTAAACATGATGACTTAATATTAAGAATTTTTCAACGAGTTGAAAAACAAACTTTGCAAAAGATCCTCACCGATGATGGGTCTCCTAATGTAAATGCAATAAGTGGGCTGTATCAGGAAATTAGTCAACATGGGGGCAAGGACTTACAAGCTTCTGACATTAAAGAACTGTTGTTTGGGAACAAATTAAGTGACACAAATATCAAAGAGGAACAGATATCAGACTTGTTGAAAACTTTTGACCGAAATGGTGACCAAATTATAACCAAAGAAGAGTTTGTCTCTGGCTTAACAGAATACATTAACCAATCAAAGCATGCTGTAGATAGACACTACCTCCCCAAAGAATCTCTCAACAAAATGTATCAGACATTCATCAAACCATGGATTGAACACGTGAGAAAAGAACGTGAATTGAAGGGACACCTTATATCTGAAGTCGTGAAGCATGCTCAGAAGGATATTGTTGGCAGGCTGCGCCAAGAGGATGGCACACCTGACAAAATTGCTATTAGAAGGTTGTTTGAGGAAATTGATGTCAACAAGGATAACCACATTTCAAGATCTGAATTGGAAAAAGTAGTCATGGGCATTCATGAGTTTGGCAAGGTTGTAGATGCTGAGGAGGCAGTTACAAAACTCGTTCAAGATCTTGATCTCAACAGAGACAATGAAATCAGTGAAACTGAGTTTGTTGAAGGTTTTACAAAATGGATGAGCTCTCTTTCCAGCCAAGCTGCCACCTCAAAATCGTCATCTCAAGGAATTCATCAAACATGGGAGGATGTAGAAAAGGTAATGGAAGAGAATCAAACAAAAGGAGCATCTGAATGGTTGACTGCTATAGCATATGTGGTGTTGGGAGTTACTATGCTAGCTCTTCTTGCAGAACCTTTAATTGCAAGTGTCCAAAAATTCTCTGAAGAAGCAGGAATTTCATCATTTTTCATCTCATTCATTTTAGTCCCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGTCATAAGAAGAGCAGTAATACTTCTCAGACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAATATTCTTGGCTTTGTGGTGATTTCTATTCTTATATACATGCGTGAGATCACTTGGGAATTCTCAGCCGATGTGCTAGTTGTGGCTATAATTTGTGCTGTAATGGGCCTCACTGCTAGTTTTCGACCCACTTTTCCTCTTTGGACATCCTTCCCTGCATACCTCATGTACCTAATAGCATTGCTTTTGGTCTTTGTCCTCAAAGATGTTCTCAACTATGTTTAA 2100 0.3938 MRTMSKTKVAAAACFTFFAFLAALLHAEGRSLRPTSVVSDGVDIFQPQESYLQLKDQTVSSSGDEKYCKQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGAVPESLILLEYASTGVGLLAGSSIMLLTVVWGTCVIVGKQKLKNDSNIGDLNSSSGGIKESLTGYGITMDVDTRKMARIMVFSVIPLLIMQIPNLFNFSSTPRNVTLMVSLTVAVAFLISYFIYQIFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILTDDGSPNVNAISGLYQEISQHGGKDLQASDIKELLFGNKLSDTNIKEEQISDLLKTFDRNGDQIITKEEFVSGLTEYINQSKHAVDRHYLPKESLNKMYQTFIKPWIEHVRKERELKGHLISEVVKHAQKDIVGRLRQEDGTPDKIAIRRLFEEIDVNKDNHISRSELEKVVMGIHEFGKVVDAEEAVTKLVQDLDLNRDNEISETEFVEGFTKWMSSLSSQAATSKSSSQGIHQTWEDVEKVMEENQTKGASEWLTAIAYVVLGVTMLALLAEPLIASVQKFSEEAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSQTMYEIYGAVFMNNILGFVVISILIYMREITWEFSADVLVVAIICAVMGLTASFRPTFPLWTSFPAYLMYLIALLLVFVLKDVLNYV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0555 699 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Aed1g0555 699 Gene3D - 372 516 - -
Aed1g0555 699 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 541 698 - -
Aed1g0555 699 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 15 379 - -
Aed1g0555 699 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
Aed1g0555 699 Pfam Sodium/calcium exchanger protein 547 690 IPR004837 GO:0016021|GO:0055085
Aed1g0555 699 Pfam EF-hand domain pair 333 363 IPR002048 GO:0005509
Aed1g0555 699 Pfam EF-hand domain pair 435 500 IPR002048 GO:0005509
Aed1g0555 699 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Aed1g0555 699 Gene3D - 293 371 - -
Aed1g0555 699 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Aed1g0555 699 SUPERFAMILY EF-hand 319 507 IPR011992 -
Aed1g0555 699 SMART efh_1 475 503 IPR002048 GO:0005509
Aed1g0555 699 SMART efh_1 337 365 IPR002048 GO:0005509
Aed1g0555 699 SMART efh_1 435 463 IPR002048 GO:0005509
Aed1g0555 699 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 386 515 - -
Aed1g0555 699 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 15 379 - -
Aed1g0555 699 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Aed1g0555 699 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 541 698 - -
Aed1g0555 699 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 386 515 - -
Aed1g0555 699 CDD EFh 436 501 IPR002048 GO:0005509
Aed1g0555 699 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0555 Aed-Chr1 7087684 7093297 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0555 386 692 EF-hand Containing Proteins AT1G53210 39.450 7.69e-62 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0555 - - gmx:100799062 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0555 1 7087684 7093297 Aed1g0555 1 7087684 7093297 ECH