Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0553 ATGAGAAACATCAATTCCAAAACACCATACTTTATCTTTCTTCTTTTATTATTAGCAGCAACAGTAGTTAAGGTCCAAGGTCGCTATGATCTGCCAGAGCGTGCAACCGAACTAGTTTCAGATGGTGTTGATCATAATAATGTTATTGATCAACACAACCAAACTTCTTCTAATTATTTAGTTCTCAAAGGAATTGATGATGATGAATCCATTGAGGAACAGTACTGCAAGCAAATGTATGGCTTCTTGCCATGCACAAACAATATATTTGGGCATCTATTTCTGATTTTGGTGTATGAGTATTTGCTGTTCCATGGAGAATCGTATTTGGCTAAAGGGGGTGAGCAAATCTTCAAGATTCTTGGCCCTGGTATCTTTGGTGCTAGTGCTTTTCACATCCTTGCTGCACTTCCAGAGTCCTTGATTCTTCTTGTTTCTGGACTTGTTGGCAACAGAGAGATAGCACAAGAATATGCCTTCACTGGGGTTGGCTTATTGGCTGGATCTTCCATTTTGCTTCTCACTCTAGTTTGGGGAAGCTGTGTCATTTCTGGCACTCAAGAATTTCAGCATCATTCTCATGCTTCTAACTCACCGCATACAACTGATCTTAAAGCCTTATTCACTGGTCGTGGCATTACTACGGATTTGGAAACCAGTTACACTGCAAGAATCATGGTTTTCTCAGTCATACCACTTGTTATCATGCAAATACCTAATTTATTCCAATTCTCTTCTGGCCTAAGAAGCGTGACCTTAGTAATTGCCCTCCTTATTACCTCCATTTTTCTGTTCCTCTACTTCCTTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAAACATGATCATTTAATACTCAGAATATTGCAACATGTTCAAAAGAACACCTTGCAGAGGATCTTCACCAAGAATGGGACTCCAAATGTGAGTGCCATAAGGCGATTATATAAGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTCTTGCTCAAAAACAAAGTAACTGAAACAAATTTTGATGAGGAGAAAGAAATAAAAGAGGTGTTGAAAATATTTGACCTGGATGGTGACAGAAAAATAACTAAGGAGGAATTTGTCAGTGGCTTCACAAAATGGCTTGATCAAACTAAGCATGCTTTAGAGAAACAGTATTTTTCAAGGAAATCACTGAAAAAAATATATCAGGTTTTTGGACCATGGATGGAAAACAAAAGAAAAGAAAGTGAAGGAAAGAAACAGCTTATATTTGAAATCTTAAGGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACACAAGATGGAAAACCTGATCAAAATGCTATTAAAGGGTTGTTTGAGAAAATTGATCGCAATAGAGACAACTTCATTTCCCACTCTGAGCTGAAAGAACTAATCATGAACATCAAGTTTGTTAAGGCATCAATGGAAGTGGAAGAAGCAGTTGCTTTAGTCATTGAAGAACTTGACATTGACAAAGACCGCACAATTAATGAGGAGGAATTTGTTGCTGGCTTTCAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCTGAGTCTCATTCCGAGTCTCAAGAAGATATGTTTCAGACCTGGGAAGAGGCTGACATGGTAGTGGAAGAGAGGCAAAGCAAAGCAGTAGTTGATAAATCAATATGGGCATGGTTTAAGGCCATAACATATGTGGTGCTTGGAATTGCTATGCTATCCATTTTGGCAGAGCCACTAGTAGAAAGTGTCCACAACTTCTCTAACAGTGCAGGAATCCATCCATTCTTCATGTCATTTATTCTAGCCCCTTTGGCAACAAATGCCAGAGAAGCAACTTCAGCAATCAGAGAAGCAAATCATAAGAAGCCTAGAACTACCTCTCTTGCCATTTCTGAGATATATGGAGGGGTGTTCATGAATAACATTCTTGGCTTCTTTGCAATCTCGATTCTGATCTTTGTTAGAGAAGTCACTTGGCAATTCTCAGCTGAATTGCTGGTTGTTGCAATTGTTTGTGCTATAACGGGCATTACTGCAAGTTTTCACTCCATATTTCCACTATGGTCATCCTTTTTTGCAATCCTCTTGTACCCTTTGTCATTGGTTCTGGTTTATGTACTTGACTATGTTCTCAATTATAATTAG 2175 0.3885 MRNINSKTPYFIFLLLLLAATVVKVQGRYDLPERATELVSDGVDHNNVIDQHNQTSSNYLVLKGIDDDESIEEQYCKQMYGFLPCTNNIFGHLFLILVYEYLLFHGESYLAKGGEQIFKILGPGIFGASAFHILAALPESLILLVSGLVGNREIAQEYAFTGVGLLAGSSILLLTLVWGSCVISGTQEFQHHSHASNSPHTTDLKALFTGRGITTDLETSYTARIMVFSVIPLVIMQIPNLFQFSSGLRSVTLVIALLITSIFLFLYFLYQIFEPWVQKRRLEYVKHDHLILRILQHVQKNTLQRIFTKNGTPNVSAIRRLYKEIDQDGSSGISASEVKDLLLKNKVTETNFDEEKEIKEVLKIFDLDGDRKITKEEFVSGFTKWLDQTKHALEKQYFSRKSLKKIYQVFGPWMENKRKESEGKKQLIFEILRHVQSDVVGSLLTQDGKPDQNAIKGLFEKIDRNRDNFISHSELKELIMNIKFVKASMEVEEAVALVIEELDIDKDRTINEEEFVAGFQKWLSSTSAPAPESHSESQEDMFQTWEEADMVVEERQSKAVVDKSIWAWFKAITYVVLGIAMLSILAEPLVESVHNFSNSAGIHPFFMSFILAPLATNAREATSAIREANHKKPRTTSLAISEIYGGVFMNNILGFFAISILIFVREVTWQFSAELLVVAIVCAITGITASFHSIFPLWSSFFAILLYPLSLVLVYVLDYVLNYN 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0553 724 Pfam Sodium/calcium exchanger protein 573 715 IPR004837 GO:0016021|GO:0055085
Aed1g0553 724 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 565 723 - -
Aed1g0553 724 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 406 530 - -
Aed1g0553 724 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 12 399 - -
Aed1g0553 724 CDD EFh 318 383 IPR002048 GO:0005509
Aed1g0553 724 SUPERFAMILY EF-hand 315 526 IPR011992 -
Aed1g0553 724 ProSitePatterns EF-hand calcium-binding domain. 366 378 IPR018247 -
Aed1g0553 724 Gene3D - 274 381 - -
Aed1g0553 724 CDD EFh 455 520 IPR002048 GO:0005509
Aed1g0553 724 ProSiteProfiles EF-hand calcium-binding domain profile. 313 348 IPR002048 GO:0005509
Aed1g0553 724 Pfam EF-hand domain pair 317 380 IPR002048 GO:0005509
Aed1g0553 724 Pfam EF-hand domain pair 453 519 IPR002048 GO:0005509
Aed1g0553 724 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 565 723 - -
Aed1g0553 724 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 406 530 - -
Aed1g0553 724 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 12 399 - -
Aed1g0553 724 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Aed1g0553 724 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Aed1g0553 724 ProSiteProfiles EF-hand calcium-binding domain profile. 353 388 IPR002048 GO:0005509
Aed1g0553 724 Gene3D - 382 534 - -
Aed1g0553 724 SMART efh_1 357 385 IPR002048 GO:0005509
Aed1g0553 724 SMART efh_1 454 482 IPR002048 GO:0005509
Aed1g0553 724 SMART efh_1 494 522 IPR002048 GO:0005509
Aed1g0553 724 SMART efh_1 317 345 IPR002048 GO:0005509
Aed1g0553 724 ProSiteProfiles EF-hand calcium-binding domain profile. 490 525 IPR002048 GO:0005509
Aed1g0553 724 ProSitePatterns EF-hand calcium-binding domain. 503 515 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0553 Aed-Chr1 7064899 7070709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0553 406 724 EF-hand Containing Proteins AT1G53210 40.663 4.30e-70 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0553 - - gmx:100798009 1180.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0553 1 7064899 7070709 Aed1g0553 1 7064899 7070709 ECH