Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0552 ATGACCATGTCTCCCTCTCTCACTTCCCGCCGGTACCTCTTCCTCATCCTCTGGATCGCGCTCCTCTGCGCCCACACCAACGCCCGCATCTACTCCGCCGATCCCGTCTCCGTCACCGACGGCGGCAGCGTCGTCTCGGAGTCCAAGTGGCAGAGCCTGCTCCGCCTCCCGACGTCGCTGGCTGGCGAGTCCACCTGCGAGCAGACCTACGGGTTCTTACCGTGCACCACCACCGTCTTTGGGAACCTGTTCCTCATCATCATCTATGGCTTCCTCATGTTCAAGGCCGCCACCTTCCTCTCCGGCGGCAGCGAGCTTCTCCTCGAGATCTTGGGCCCCGGCATTGTTGGCGGCCTCTTTCTCCCCATCCTCGGCGCTCTCCCCGACGCCATGCTCATTCTAGTGTCTGGGCTTTCAGGTAGTAAAGAAGTTGCTCAAAGTCAGGTATCTGTTGGGATGGGACTGCTAGCTGGGTCAACGACGCTGCTTCTGACTATAATATGGGGGACATGTGTAATTGTTGGCAAGTGTGACATCGAGGGTTCAATTGCAATAGATTCACGAGACACTATGGGATTTAGTTTAACTGGTTCTGGTGTTAGTACTGATATTTGGACAAGTTATGCTGCAAGGATTATGGTTTTATCTGTCCTTCCATTTGTGATCGTTCAATTCCCACAAATTCTCCATTCAACTTCAGGGAGGCACTTGGCTGTTTTGATTGCTCTCATTGTATCTCTCCTATTATTGATTTCTTATTGTTTTTACCAGATTTTCCAGCCCTGGATACAAAGTAGGAAGCTTGAATTTATTAAACACAAGCATGTTATCTTAGGACTTTTGACACATTTGAAGAAGCATGCATTGGGAAGGCTGCTGACAGAAGATGGTGAACCTGACAAAGAAGTCATTAAAAAATTGTTTCAAACCATTGATGACAATCAAGATGGCAGTCTTACTCATAGTGAATTAAGAGCACTGGTTATTGGAATTCAGTTTGAGGAGATTGACCTGGATCATGATGATGCTGTAAAAAGAATCATGGGTGACTTTGATACTTCTGGTAATGAACTTGTTGATGAAGAAGAATTTGTTAATGGTGTCTGTAGATGGCTTCGAAGGGCCCAACGTGCTCGAGTTGCATCTGGTGATGCTGGTCCACACACAATGAAGTTTTTGAGTGATTTTCACAATGAAACAAAGAGGGAGCATGATCTGCTGGATGTGGGAGGTCAGGGTAATGAAGAGGCTGAGGGCATTCAGGATGCTAAATGGATTTCCATCAAAGCAGTTCTGCTTCTGCTACTGGGTACTATTATTGCTGCTGCATTTGCTGATCCTCTGGTTGATGTTGTGGATAACTTTTCTGAGGCTACAAGCATTCCTGCTTTCTTCATTTCCTTCATTTTTCTGCCTTTAGCAACCAATTCAAGTGAAGCAGTGTCAGCTATAATTTTTGCTAGTCGTGACAAGAGGCAAACTGCCTCATTAACTTTTTCTGAGCTATATGGAGCAGTGACAATGAACAACGTGCTTTGCCTATCAGTTTTCTTGGCCCTTGTTTATGCGAGGGGATTGACATGGGACTTCTCTTCAGAAGTGTTGGTGATTCTCATCGTTTGCATCGTCGTAGGCGTCTTTGCCAGCTTCCGGACTGTCTTCCCACTATGGACATCTATTCTGGCTATCCTGCTTTATCCCTTCTCCCTGGCATTGGTGTATGTTCTTGATTATGTATTTGGTTGGTCGTAG 1752 0.4669 MTMSPSLTSRRYLFLILWIALLCAHTNARIYSADPVSVTDGGSVVSESKWQSLLRLPTSLAGESTCEQTYGFLPCTTTVFGNLFLIIIYGFLMFKAATFLSGGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKEVAQSQVSVGMGLLAGSTTLLLTIIWGTCVIVGKCDIEGSIAIDSRDTMGFSLTGSGVSTDIWTSYAARIMVLSVLPFVIVQFPQILHSTSGRHLAVLIALIVSLLLLISYCFYQIFQPWIQSRKLEFIKHKHVILGLLTHLKKHALGRLLTEDGEPDKEVIKKLFQTIDDNQDGSLTHSELRALVIGIQFEEIDLDHDDAVKRIMGDFDTSGNELVDEEEFVNGVCRWLRRAQRARVASGDAGPHTMKFLSDFHNETKREHDLLDVGGQGNEEAEGIQDAKWISIKAVLLLLLGTIIAAAFADPLVDVVDNFSEATSIPAFFISFIFLPLATNSSEAVSAIIFASRDKRQTASLTFSELYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVILIVCIVVGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0552 583 Gene3D - 419 576 IPR044880 -
Aed1g0552 583 Pfam EF-hand domain pair 301 366 IPR002048 GO:0005509
Aed1g0552 583 ProSiteProfiles EF-hand calcium-binding domain profile. 299 334 IPR002048 GO:0005509
Aed1g0552 583 CDD EFh 304 368 IPR002048 GO:0005509
Aed1g0552 583 SMART efh_1 343 371 IPR002048 GO:0005509
Aed1g0552 583 SMART efh_1 303 331 IPR002048 GO:0005509
Aed1g0552 583 Gene3D - 281 413 - -
Aed1g0552 583 SUPERFAMILY EF-hand 298 371 IPR011992 -
Aed1g0552 583 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 20 580 IPR004713 GO:0006812|GO:0008324|GO:0016021
Aed1g0552 583 Pfam Sodium/calcium exchanger protein 430 574 IPR004837 GO:0016021|GO:0055085
Aed1g0552 583 Pfam Sodium/calcium exchanger protein 84 260 IPR004837 GO:0016021|GO:0055085
Aed1g0552 583 ProSitePatterns EF-hand calcium-binding domain. 312 324 IPR018247 -
Aed1g0552 583 PANTHER SODIUM/CALCIUM EXCHANGER NCL 20 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0552 Aed-Chr1 7056998 7062300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0552 28 583 EF-hand Containing Proteins AT1G53210 67.491 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0552 - - gmx:100809896 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0552 1 7056998 7062300 Aed1g0552 1 7056998 7062300 ECH