Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0529 AGAGAAGCGCGTGCTGGCGCGTGGGTCTCACCGTGGTGTGTGTCTGTCCCCACTGGAGAATGGGACACTGGAGAATGGGGAAGGAAGGAGAAGCTGAGAGTGAGAGATAAGGAAACCAAACTCCGCAAAACAACCAACATAGGAATATCACTTTCTTTGCTCTCTCCCAACCCTATGGCTACTTCCATTAACAGCAGCAGTGCTCTGGGGTGGAAACATTCCTCCTTGTTCGTACAATCTAATAATGGCTTCAATGTCGCTTCGCCTCCTTTCAAACCCAAAACTCCACGCTCCAAGTTTTCTCTCACTTGCTCTGCCTCCTCCTCCTCCTCCTCTTCTTCTTCTGATCCACTATTGGTTAAGGCTGCTAGGGGAGATGCTGTTGGTCGTCCTCCGGCATGGATGATGCGCCAGGCAGGAAGGTACATGGCTGTTTACAAAAAGCTTGCTGAGAAATATCCATCCTTCCGAGAGAGGTCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTCATTATCTTCTCGGACATCCTTACGCCACTTCCTGCATTTGGAGTTGATTTTGACATAGAAGAAGTAAGGGGACCTGTTATACATTCACCCATTCGTTCTGAGGAAGGATTAAGGGTTTTGCATCCAATTGACCTGGACAGGCTTAGATTTGTTGGAGATTCACTTAAGATACTGCGCCAAGAGGTTGGTGGTCATGCAGCTGTTTTGGGTTTTGTGGGAGCACCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACAACACGCACGTATACAACCATTAAGAGCATGTGCCACACTGCTCCACATGTATTGAAGACTTTGCTTTCTCATTTGACGCAGGCAATAGCTGATTATGTTATTTTCCAAGTGGAGTCTGGGGCTCACTGCATTCAAATATTTGATTCATGGGGTGGACAACTACCACCTGAAATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAATGCCCTGAGGTACCAATTGTTCTTTATATAAATGGAAATGGTGGCCTTCTTGAGCGTATGAAAGACACTGGAGTTGATGTTATAGGGCTAGACTGGACAGTAGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTTCAGGGAAATGTGGACCCTGCCTACTTATTCTCCCCTCTTGATGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGACGGCACATCCTTAATCTGGGACATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGCAGTTTGAAACACTTTTTCAAAACAATACTGCAAAAGACCCTAAACTTGTAATTTAA 1419 0.4574 REARAGAWVSPWCVSVPTGEWDTGEWGRKEKLRVRDKETKLRKTTNIGISLSLLSPNPMATSINSSSALGWKHSSLFVQSNNGFNVASPPFKPKTPRSKFSLTCSASSSSSSSSSDPLLVKAARGDAVGRPPAWMMRQAGRYMAVYKKLAEKYPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGVDFDIEEVRGPVIHSPIRSEEGLRVLHPIDLDRLRFVGDSLKILRQEVGGHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLKTLLSHLTQAIADYVIFQVESGAHCIQIFDSWGGQLPPEMWERWSKPYIKEIVNLVKKKCPEVPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLDALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLQFETLFQNNTAKDPKLVI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0529 472 Hamap Uroporphyrinogen decarboxylase [hemE]. 115 455 IPR006361 GO:0004853|GO:0006779
Aed1g0529 472 TIGRFAM hemE: uroporphyrinogen decarboxylase 119 452 IPR006361 GO:0004853|GO:0006779
Aed1g0529 472 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 132 141 IPR000257 GO:0004853|GO:0006779
Aed1g0529 472 CDD URO-D 121 453 IPR006361 GO:0004853|GO:0006779
Aed1g0529 472 Gene3D - 107 456 IPR038071 -
Aed1g0529 472 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 95 467 - -
Aed1g0529 472 Pfam Uroporphyrinogen decarboxylase (URO-D) 118 453 IPR000257 GO:0004853|GO:0006779
Aed1g0529 472 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 251 267 IPR000257 GO:0004853|GO:0006779
Aed1g0529 472 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 95 467 - -
Aed1g0529 472 SUPERFAMILY UROD/MetE-like 118 455 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0529 Aed-Chr1 6894295 6897462 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0529 K01599 - gmx:100807032 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0529 1 6894295 6897462 Aed1g0529 1 6894295 6897462 ECH