Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0516 ATGGGAGGTGGATTTAGAGTGCTTCACTTGGTTAGGCCATTTCTCTCGTTTCTTCCCGAAGTTCAAACTGCTGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATACACTGTGATCTCTCTTTTCATTTTCCTGGTTTGTAGTCAGCTCCCTCTATATGGGATACACTCAACAACAGGTGCCGATCCATTCTATTGGATGCGTGTTATTCTCGCATCTAATCGTGGAACTGTCATGGAGCTTGGAATCACTCCTATTGTGACTTCTGGGCTAGTAATGCAACTTCTGGCTGGGTCAAAGATCATTGAAGTGGACAACAATGTACGAGAGGATCGGGCCCTATTAAACGGAGCACAGAAGCTACTTGGTATTTTGATAGCTGTTGGTGAGGCGGTTGCCTATGTTCTTTCAGGGATGTATGGTAGTGTTGGGCAACTTGGAGTAGGAAATGCCATCCTCATTATCATCCAGCTCTGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTAGGGTCTGGAATTTCCCTATTCATAGCAACTAATATATGTGAAAACATTATATGGAAGGCATTTAGTCCCACTACCATTAACAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTTATTGCTCTGTTCCATTTGTTGATAACTAGATCAGACAAGGTCCGTGCTCTTCGTGAGGCGTTTTACCGGCAGAATCTTCCGAATGTGACAAATTTGCTTGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGTTTCCGTGTAGTCTTGCCTGTAAGGTCAAAGAATGCTCGTGGACAGCAGGGTTCATATCCAATCAAATTGTTTTATACCTCCAACATGCCCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGCTGCTCCACCGTAAGTACAACGGAAACTTCTTTGTAGATCTATTGGGAAAGTGGAAGGATTCTGAATATGGAGGTGGTCACTCTGTTCCTGTTGGTGGTATTGCATACTATATCACTGCACCATCCAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCTCTGTTCTATCTCGTGTTTATGCTTTCAGCTTGTGCCTTGTTCTCTAAAACATGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTTAAGGAACAACAAATGGTAATGCCTGGACACCGTGAGTCAAACTTGCAGAAAGAGCTGAATCGATACATTCCGACCGCAGCAGCATTTGGAGGCATTTGCATTGGTGCCCTGACAGTGTTGGCAGATTTCATGGGGGCCATTGGTTCAGGAACAGGAATATTGCTTGCAGTAACGATCATCTATCAGTACTTTGAGACATTCGAGAAGGAAAGAGCTAGCGAGCTTGGCTTCTTTGGTTTCTAA 1431 0.4382 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYNGNFFVDLLGKWKDSEYGGGHSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0516 476 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
Aed1g0516 476 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 1 476 IPR002208 GO:0015031|GO:0016020
Aed1g0516 476 Pfam SecY 77 459 IPR002208 GO:0015031|GO:0016020
Aed1g0516 476 SUPERFAMILY Preprotein translocase SecY subunit 10 466 IPR023201 -
Aed1g0516 476 Gene3D SecY subunit domain 9 474 IPR023201 -
Aed1g0516 476 Pfam Plug domain of Sec61p 42 76 IPR019561 -
Aed1g0516 476 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 31 467 IPR002208 GO:0015031|GO:0016020
Aed1g0516 476 PIRSF SecY_Sec61alpha 8 471 IPR002208 GO:0015031|GO:0016020
Aed1g0516 476 PANTHER F9K20.24 PROTEIN 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0516 Aed-Chr1 6793825 6798572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0516 1 476 Miscellaneous Gene Families AT2G34250 92.857 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0516 K10956 - gmx:100809703 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0516 1 6793825 6798572 Aed1g0516 1 6793825 6798572 ECH