Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0452 ATGAGCAGTATCGGAACAACACTTTCACTTTCAACAACACCGCACCACTGTTTCCCCTCCAACACCGTTTCCCCAGTCCAATTCCTCTCCTTACGCAACCACAATCGAAACCACAATCTCCGATTAATTTGTTTCTCTTTAAAAAATCCGTCGCAGCAGCCGCCGGTGGTGGTGGTGGGGTCCGCCAACGCCGACATCTACGTGGAGATCGACCGTCTCCCGCGCGAGGGCGAGACCCTGGCCGCGAAGTTCGGCCAGACGCTCGCCGGCGGCAAGGGCGCCAACCAGGCCACGTGCTCCGCCAAGCTCTCCTACCCGACCTACTTCGTCGGACAGGTCGGCGACGACGCTTACGGAAACCTCCTCGCCGACGCGCTTCGCGGCGGCGGGGTCCGCCTCGATAGCCTCGCCGTGGTGGCGTCCGCGCCCACGGGTCACGCCGTTGTCATGCTCCAATCCAATGGACAGAACTCCATCATCATCATCGGGGGCGCCAACATGAGCGGCTGGCCCAGTGCACTGCCACGTCAGCATTTGGACCTCGTTGCCCAAGCTGGCATTGTTTTGCTGCAGAGGGAGATTCCTGATTCAGTCAACGTTCAAGTCGCACAGGCTGCGAGGAATGCCGGTGTGCCGGTAGTGTTGGATGCTGGGGGCATGGATGGGCCACTTCCGCCGCAACTGTTGAATTTTGTCGATATTTTGAGTCCCAATGAATCTGAACTCGCTCGCCTCACCGGAATGCCAACCGGAAGTTTTGAAGAGATTGCGCAGGCTGCTTTGAAATGCCATGAATTGGGAGTTAAACAAGTTCTTGTGAAACTTGGTGAAAAAGGATCAGCCCTTTTTGTAGAAGGAGAAAAACCAATTCAGCAGCCTGCCATACTTGCTAAAACAGTTGTTGATACAACTGGTGCTGGTGATACTTTCACTGCTGCTTTTGCTGTGGCCTTGGTTGAGGGCAAGTCCAATAAGGAATCCCTCAGATTTGCCGCTGCTGCAGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCCAGCATGCCTGATAGGAAATCTGTTTTGGATCTTCTTAATTCTCAATGA 1086 0.547 MSSIGTTLSLSTTPHHCFPSNTVSPVQFLSLRNHNRNHNLRLICFSLKNPSQQPPVVVVGSANADIYVEIDRLPREGETLAAKFGQTLAGGKGANQATCSAKLSYPTYFVGQVGDDAYGNLLADALRGGGVRLDSLAVVASAPTGHAVVMLQSNGQNSIIIIGGANMSGWPSALPRQHLDLVAQAGIVLLQREIPDSVNVQVAQAARNAGVPVVLDAGGMDGPLPPQLLNFVDILSPNESELARLTGMPTGSFEEIAQAALKCHELGVKQVLVKLGEKGSALFVEGEKPIQQPAILAKTVVDTTGAGDTFTAAFAVALVEGKSNKESLRFAAAAACLCVQVKGASPSMPDRKSVLDLLNSQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0452 361 CDD ribokinase 55 350 IPR011877 GO:0004747|GO:0006014
Aed1g0452 361 Hamap Ribokinase [rbsK]. 54 356 IPR011877 GO:0004747|GO:0006014
Aed1g0452 361 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 302 315 IPR002173 GO:0016773
Aed1g0452 361 SUPERFAMILY Ribokinase-like 55 358 IPR029056 -
Aed1g0452 361 Gene3D - 53 360 IPR029056 -
Aed1g0452 361 PANTHER SUGAR KINASE 52 360 - -
Aed1g0452 361 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 90 114 IPR002173 GO:0016773
Aed1g0452 361 Pfam pfkB family carbohydrate kinase 56 350 IPR011611 -
Aed1g0452 361 PRINTS Ribokinase signature 227 242 IPR002139 GO:0016301
Aed1g0452 361 PRINTS Ribokinase signature 157 170 IPR002139 GO:0016301
Aed1g0452 361 PRINTS Ribokinase signature 85 104 IPR002139 GO:0016301
Aed1g0452 361 PRINTS Ribokinase signature 58 79 IPR002139 GO:0016301
Aed1g0452 361 PRINTS Ribokinase signature 271 282 IPR002139 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0452 Aed-Chr1 6292647 6295858 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0452 K00852 - gmx:102666284 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0452 1 6292647 6295858 Aed1g0452 1 6292647 6295858 ECH