Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1959 ATGAGGATGAGTATAGCGGCACAGACACAATCGATGTTGAGGAGTGGTCAGCGTGAGTTATCGGTGGCGGTGACAAGGCAGTGGGAGGAAAGATGGCTTACCCTGCCTCCCGTGAGTGCGAGTGTGAAGGCAAAGGGAAATGAAGTGGGTTCCAGTCCCGCCACTGCGCTCAAATGGGTTGTTCAGTGTTGCCCCCACCTGCCCAGAGCCCTCGTGCACAAGCTTTTCCGTCTAAGGCAGGTTCGAATTCACCCCGCCACTTCCACTTCCATACAACATCAAACATTCAAAAGGGTGGCAGCTAAGAACACCTTGAACACAGGAGATCGGATCTTACTTCCTCACTCTGTTCAACCTAAACAAACGCCGTCACCTACACACTCTCACTCTCATCTCTCTCCCCAACAAATCAACTTTATCCTTACTCTTGTTATCTATAAGGATCCTGCCATTCTCGTCCTCAACAAACCTCCAGGAATGCCAGTGCAGGGTGGCATTAATATCAAACGGAGTTTAGATGTACTAGCTGCTGCATGTTTAAAATATGATTACTCTGAACCCCCTCGTCTGGTGCATAGACTAGACAGAGACTGTTCTGGCATTCTGGTGATGGGAAGGACACAGACCAGTACTACAGTCCTGCATTCCATCTTCCGGGAGAAAACTTCCCGGGCATTATATGATATTGGCAAAGAGAACAGAATACTACAAAGACGGTACTGGGCACTGGTCCTTGGGTGTCCTAGACGTCCAAAGGGCTTGGTCACTGCTTCACTGGGTAAGGTGGTGGTTGACAATGGGAGATCTGAACGAATAACTATCATTGACAATTCTACATTAATGTCATCACAGCATGCAATTACAGAGTACCGAGTGATTGCATCATCATCACAAGGTTACACATGGTTGGAGCTGTCCCCTTTAACTGGTAGAAAACACCAGCTTCGAGTCCACTGTGCTGAGGTGTTAGGCACACCAATAGTTGGGGACTACAAGTATGGATGGCAAGCTCACAGGAAGTGGGGACATTTTGATTTGCCTAATGCGGAGGACTCACGTGAAGAGCTTCTCAATGAAGAAACTCTCCCCTTTGGCCTTAATATGAACAAAGGGAGCATTTCTGAGAATCATCCTCGTTTACATCTTCATTGCAAGCAAATAGTTTTGCCCAATATATCTCAAGCACTACAAAATGTGCAATCAGCTTCCAAATGTGATATTTCACTGGTGGAAGGGCTTGAGTTGGTGGCGGATTTGCCTTCATACATGCAAAGAAGCTGGGATGTCACAAATTATTGA 1299 0.4688 MRMSIAAQTQSMLRSGQRELSVAVTRQWEERWLTLPPVSASVKAKGNEVGSSPATALKWVVQCCPHLPRALVHKLFRLRQVRIHPATSTSIQHQTFKRVAAKNTLNTGDRILLPHSVQPKQTPSPTHSHSHLSPQQINFILTLVIYKDPAILVLNKPPGMPVQGGINIKRSLDVLAAACLKYDYSEPPRLVHRLDRDCSGILVMGRTQTSTTVLHSIFREKTSRALYDIGKENRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSERITIIDNSTLMSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNAEDSREELLNEETLPFGLNMNKGSISENHPRLHLHCKQIVLPNISQALQNVQSASKCDISLVEGLELVADLPSYMQRSWDVTNY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1959 432 Gene3D Pseudouridine synthase 138 402 - -
Aed11g1959 432 SUPERFAMILY Pseudouridine synthase 143 391 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed11g1959 432 Pfam RNA pseudouridylate synthase 151 320 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed11g1959 432 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 31 430 - -
Aed11g1959 432 CDD PseudoU_synth_RluA_like 151 342 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed11g1959 432 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 31 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1959 Aed-Chr11 22276143 22279439 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1959 - - gmx:100779473 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1959 11 22276143 22279439 Aed11g1959 11 22276143 22279439 ECH