Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1953 ATGGCTCTGTTGTCTTTTGGGATTTTCTCTTCTTCTTCTTGTTCTTTTTCTGTTCTCCCACCACAAGAAACTCTCACTTTCATGAGGCCATCTCCTTCTCCTTCTGGGTTGCGAATGCTGCGAACCATTACCTCTTGCACCGTCTCTCGCTCCGACCCGGGCACGGGCACGGGCACTGGCACCCGCAAAATCCGTGGTATCATGAAACCCCGCAAAGTCTCCCCCGAGATGGAAGACCTCGTCGGCGCTCCTGAGATTTCTCGAACTCAAGTCCTCAAACGGATTTGGGCTTACATTAAGGACAAAAATCTTCAGGACCCTACAGACAAGAGGACTATAAATTGTGATGAGAAGCTGAAGAAGGTGTTTGCAGGGAAAGATCAAGTTGAGATGCTAGAGATTGCTCGCTTGATTAGCCCTCACTTCCTTTAA 432 0.4884 MALLSFGIFSSSSCSFSVLPPQETLTFMRPSPSPSGLRMLRTITSCTVSRSDPGTGTGTGTRKIRGIMKPRKVSPEMEDLVGAPEISRTQVLKRIWAYIKDKNLQDPTDKRTINCDEKLKKVFAGKDQVEMLEIARLISPHFL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1953 143 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 4 143 - -
Aed11g1953 143 Gene3D SWIB/MDM2 domain 61 143 IPR036885 -
Aed11g1953 143 ProSiteProfiles SWIB/MDM2 domain profile. 66 143 IPR003121 -
Aed11g1953 143 SMART swib_2 67 143 IPR019835 -
Aed11g1953 143 Pfam SWIB/MDM2 domain 69 142 IPR003121 -
Aed11g1953 143 CDD SWIB-MDM2_like 71 142 - -
Aed11g1953 143 PANTHER BNACNNG65730D PROTEIN 4 143 - -
Aed11g1953 143 SUPERFAMILY SWIB/MDM2 domain 61 142 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1953 Aed-Chr11 22245655 22247530 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aed11g1953 SWIB 6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1953 - - gmx:100306198 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1953 11 22245655 22247530 Aed11g1953 11 22245655 22247530 ECH