Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1947 ATGGGAATCCGATCGGTGTTCGATGGCGGCGAGTTGTCGAAAAGTGGAATTGACCCTAAATTCATTCCAATCATATGGAAGCATGTTTATGCGAAAGCGAAAGGGGAAGTGGAAGAAGGTTGGGATTGGGAGAAACAAGTTCCATGGTTGCCCTCTTCAGCATACTCTATCCTTGGGTCGAACTTGAAAAACCCTCTCTCTTCCTCTCTCCACTCCGTTTTCCACTCTTCCGATAACCTGACCTCGAAGCTCCTCATCAAGCTCCGTAATGGAGCATTTGTCGAGGCTGTCATAATGAGGTATGATACTCGTTTGGGCAAATATGCTGGCCAACCCCGCCCCGGTGGTCTAAGAGCTACCTTGTGTATTTCATCTCAGGTTGGATGCAAAATGGGTTGCAAATTCTGTGCGACTGGATCTATGGGATTTAAAAACAACCTGTCCTCCGGAGAAATTGTGGAACAGCTCGTTCATGCCTCTGCTTTCTCACAAATCCGTAATGTTGTCTTCATGGGTATGGGAGAGCCTCTGAACAACTACTCTGCTGTGGTAGAAGCCGTTCGCATCATGACTGGATTGCCTTTTCAATTGTCATCCAAAAGAATTACCATCTCAACGGTTGGCATCATTCATGCTATCAACAAGCTTCATAATGACCTGCCTGGTTTGAACTTGGCAGTCTCACTGCATGCAGCAGCCCAAGACATCCGTTGCCAGATAATGCCTGCCGCCCGTGCTTTCCCTTTGGATAAACTTATGGATTCACTGCAGCAATATCAAAGGAAAAGTCTGCAGAAAATATTAATTGAATACATAATGCTTGATGGGGTCAATGATGAAGACCACCATGCCCACCAATTGGGGAAACTGTTAGACACATTTCAAGTGGTAGTGAACTTAATACCTTTCAACTCTATTGGTACCTTGAGTCAATTCAAACCTACCAGTGAGCAGAAAGTCTCAAATTTTCAGAAAATTCTTAGGGGTACCTATAATATTCGAACAACAGTTCGGAAGCAGATGGGTCAGGACATAAGTGGTGCTTGTGGACAATTGGTGGTTAACATACCTGACAAATCTCTTGGCAATGCAGATCCCCTAACGGACATAGAAGATCTTGTTATCTGA 1128 0.4468 MGIRSVFDGGELSKSGIDPKFIPIIWKHVYAKAKGEVEEGWDWEKQVPWLPSSAYSILGSNLKNPLSSSLHSVFHSSDNLTSKLLIKLRNGAFVEAVIMRYDTRLGKYAGQPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASAFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSSKRITISTVGIIHAINKLHNDLPGLNLAVSLHAAAQDIRCQIMPAARAFPLDKLMDSLQQYQRKSLQKILIEYIMLDGVNDEDHHAHQLGKLLDTFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNIPDKSLGNADPLTDIEDLVI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1947 375 ProSiteProfiles Radical SAM core domain profile. 115 344 IPR007197 GO:0003824|GO:0051536
Aed11g1947 375 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 5 365 - -
Aed11g1947 375 PIRSF Cfr 9 366 IPR004383 GO:0006364|GO:0008173
Aed11g1947 375 Gene3D Aldolase class I 69 359 IPR013785 -
Aed11g1947 375 SFLD adenosine C2 methyltransferase (RlmN-like) 75 356 IPR004383 GO:0006364|GO:0008173
Aed11g1947 375 SFLD Radical SAM 75 356 IPR007197 GO:0003824|GO:0051536
Aed11g1947 375 PANTHER 23S RRNA METHYLTRANSFERASE 5 365 IPR040072 -
Aed11g1947 375 SUPERFAMILY Radical SAM enzymes 120 294 - -
Aed11g1947 375 Pfam 4Fe-4S single cluster domain 128 214 - -
Aed11g1947 375 CDD Radical_SAM 128 329 - -
Aed11g1947 375 Pfam Radical SAM superfamily 124 283 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1947 Aed-Chr11 22222057 22223920 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1947 - - ccaj:109814608 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1947 11 22222057 22223920 Aed11g1947 11 22222057 22223920 ECH