Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1774 ATGGCGAAGGAGTTGTTGAGTCTTGATGATGGCACAACCTGCACATCCTGGAACTATTCTGGCACCAGACTCGCTGCGGGTTCCGCCGATGGCACGCTTTCAATCTTCGATTCCCACGACCCACCTTCTTCTTCCTCCCTCCGCTGTACTTTCAAATCCAGGGTTCTAGAAGGAAACATCGTGAAGATTGCTTGGATTCCGCCAGAGTATGGTGATGCAGTTGCGTGCGTTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCACAAGATTCCCAGTCTCTTCAGTGGAAGATGTGCAAAAGCTTTGGAAACAGTTCAAGCAAAGTCCTTGATGTTCAATTTGGAATCTCTCTGACTAGTCTGAAAATGGTTGCTGCATATTCAGATGGTAATGTAAGAGTTTTTGAGCTCTTGGATCCCTTGGAACTGAGAAACTGGCAGCTTCAGGCTGAATTTCAAAATGTTATTGAGTCAGTGTCTTCATTTGGAAAGGCTGCATGCCTCTCTGCATCCATATCCTGGAATCCACAAAAAGGTGGAAGCCAGGAATCCAGCTTCCTTGTAGGCTTTAATTCAAATACATCAGATCTTAATTCTTCTAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCAGTGGCAGAATTGGAACTGCCCGAAGACAAGGGTAATCAGGTTTATGCTGTTGCATGGGCACCAAATATTGGGAGACCGTATGAGATCATTGCGGTTGCAACCCACAAGGGACTTGCGATATGGCAACTTGGATTGAACCCTGATCATGATGGAAGACTCCCAGTAGAGAGAGTTGCACTACTGTCTGGTCATGAGGGCATGGTTTGGCAAATGGAGTGGGATATGAGTGGAATGACGTTGGCTACTACAGGTCATGATGGAATGGTCCGATTATGGCAGTCCAATCTCAATGGCTGTAGTGGTGGTGGTAATAGCAACGATGTGATAGTGACAGTGGTGGTGGTGTTGGTGTTGGTAGCAACGATGGTGGTAAAATGGTGGTTATAA 1035 0.4647 MAKELLSLDDGTTCTSWNYSGTRLAAGSADGTLSIFDSHDPPSSSSLRCTFKSRVLEGNIVKIAWIPPEYGDAVACVSADGIVSLWEEVAQDSQSLQWKMCKSFGNSSSKVLDVQFGISLTSLKMVAAYSDGNVRVFELLDPLELRNWQLQAEFQNVIESVSSFGKAACLSASISWNPQKGGSQESSFLVGFNSNTSDLNSSKVWEFDQAHQRWLPVAELELPEDKGNQVYAVAWAPNIGRPYEIIAVATHKGLAIWQLGLNPDHDGRLPVERVALLSGHEGMVWQMEWDMSGMTLATTGHDGMVRLWQSNLNGCSGGGNSNDVIVTVVVVLVLVATMVVKWWL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1774 344 SUPERFAMILY WD40 repeat-like 8 311 IPR036322 GO:0005515
Aed11g1774 344 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 6 314 IPR037363 GO:0005198
Aed11g1774 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
Aed11g1774 344 PANTHER NUCLEOPORIN SEH1 6 314 IPR037597 GO:1904263
Aed11g1774 344 Pfam WD domain, G-beta repeat 13 37 IPR001680 GO:0005515
Aed11g1774 344 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Aed11g1774 344 Gene3D - 9 316 IPR015943 GO:0005515
Aed11g1774 344 SMART WD40_4 213 258 IPR001680 GO:0005515
Aed11g1774 344 SMART WD40_4 44 87 IPR001680 GO:0005515
Aed11g1774 344 SMART WD40_4 97 138 IPR001680 GO:0005515
Aed11g1774 344 SMART WD40_4 270 309 IPR001680 GO:0005515
Aed11g1774 344 SMART WD40_4 1 37 IPR001680 GO:0005515
Aed11g1774 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 309 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1774 Aed-Chr11 21148121 21151310 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1774 K14299 - gmx:100780788 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1774 11 21148121 21151310 Aed11g1774 11 21148121 21151310 ECH