Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1742 ATGGGGTGGTACAATTTGGTATTCATTGGTGTGTTGTTGTGGTGTAGCAGTGCCATGAGTTCCTCCTCGGACGACTATGCAGATGCTCTTGCCAAAGCCATCTTGTTTTTTGAAGGACAACGCTCAGGGAAGTTACCCACCACCCAAAGAGTTAACTGGAGGGGAGACTCGGCTCTCTCTGATGGCAAACTTCATAACGTGGATCTGAATTTGATTGGAGGATATTACGATGCTGGTGATAACGTCAAGTTTGGATGGCCAATGGCATTTACAACTACCTTATTGAGTTGGGCTGCTGTAGAGTACCACACTCAGATCTCTTCGGTGAACCAACTTGGTTATCTCCATGCTGCTATCCGTTGGGGCGCAGACTTTATACTCAGAGCCCACACTTCCCCAACCACACTCTATACACAGCTGTTTGATTTTGCAGACAAGTACAGAGGTTCGTACTCGGCTTCTTGTCCATTCTATTGCTCCTACTCAGGTTACCAGGATGAACTGTTATGGGCTAGTTCTTGGCTATACAAGGCAAGTGGAGAAAGCAAGTACTTGAGCTACACCATAGGCAACCGAGGTTGGAGTCATGCGGTGTCTGAATTCAGCTGGGATAACAAATTTGTTGGAGCTCAGATATTACTAACGGAGGAATTCTATGGTGGGAAGCAAGACTTGACCAAGATTAAGAGTGACGCCGAATCATTTATATGTGCAGTGATGCCAGGAAGTAGCTCTCAACAGATTCAAACAACTCCTGGTGGACTTCTGTTTACAAGAGACAGCAGTAATTTGCAATATGCGACGAGCTCAACCATGGTGCTGTTCATTTTCTCTAAAATCCTAAACAGAAATCATATTGATGGAGTCCATTGTGGTTCGGCGCATTTCACCCCCTCTCAAATTAGATCCTTTGCGAAATCACAGGTGGACTACATACTAGGAAACAATCCGATGAAGATGTCGTACATGGTGGGATTTGGCAGTAAATACCCAAAGCAATTACATCACAGAGGCTCCTCCATCCCTTCAATCAATGTTCACCCGACCAAGGTGGGTTGCAATGATGGTCTCTCAGGTTTTTACAATTCTGCTAATCCAAATCCCAATACTCATGTGGGAGCGATTGTTGGAGGCCCTGATTCAAATGACCAATTCAATGATGCAAGATCTGACTATTCTCACACCGAACCAACCACCTACATGAATGCTGCTTTCGTGGGTTCAGTGTCTGCTTTGCTTGGCAAAACGCCCGAAACCAATTTGAGGACTCTGCACTTTCCCCATATCGATCAAGTTAATTAA 1302 0.4508 MGWYNLVFIGVLLWCSSAMSSSSDDYADALAKAILFFEGQRSGKLPTTQRVNWRGDSALSDGKLHNVDLNLIGGYYDAGDNVKFGWPMAFTTTLLSWAAVEYHTQISSVNQLGYLHAAIRWGADFILRAHTSPTTLYTQLFDFADKYRGSYSASCPFYCSYSGYQDELLWASSWLYKASGESKYLSYTIGNRGWSHAVSEFSWDNKFVGAQILLTEEFYGGKQDLTKIKSDAESFICAVMPGSSSQQIQTTPGGLLFTRDSSNLQYATSSTMVLFIFSKILNRNHIDGVHCGSAHFTPSQIRSFAKSQVDYILGNNPMKMSYMVGFGSKYPKQLHHRGSSIPSINVHPTKVGCNDGLSGFYNSANPNPNTHVGAIVGGPDSNDQFNDARSDYSHTEPTTYMNAAFVGSVSALLGKTPETNLRTLHFPHIDQVN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1742 433 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 385 403 IPR033126 -
Aed11g1742 433 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 311 337 IPR018221 -
Aed11g1742 433 Gene3D - 20 138 IPR012341 GO:0005975
Aed11g1742 433 Gene3D - 139 427 IPR012341 GO:0005975
Aed11g1742 433 SUPERFAMILY Six-hairpin glycosidases 23 419 IPR008928 GO:0005975
Aed11g1742 433 PANTHER ENDO-1,4-BETA-GLUCANASE 19 139 - -
Aed11g1742 433 PANTHER ENDOGLUCANASE 18-RELATED 140 419 - -
Aed11g1742 433 PANTHER ENDO-1,4-BETA-GLUCANASE 140 419 - -
Aed11g1742 433 Pfam Glycosyl hydrolase family 9 139 407 IPR001701 GO:0004553|GO:0005975
Aed11g1742 433 PANTHER ENDOGLUCANASE 18-RELATED 19 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1742 Aed-Chr11 20969122 20971579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1742 140 413 Glycoside Hydrolase AT4G23560 70.803 8.65e-146 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1742 - - gmx:547834 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1742 11 20969122 20971579 Aed11g1742 11 20969122 20971579 ECH