Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1688 ATGGATGATGACCTGACAAACAAAGCACCATCTGGTGTCATAAAAGCGATAAAGTTTGATGTCTTAACTGAAGAAGATATAGAGAATATCTCTGTTTTGGAGATAAATGCGGTTGGGCAGGTCACTGGGTCGAATTTGGGATTCCCAAATGCATCCGAAGAGTGTACCACTTGTGGCTCTAAAGACAAAAAGTTCTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTTTTGTCATACTCCATCCATATTTTATGTCAGAGATAGTACACATACTGAACAAGATGTGCCCTGTTTGTAAATCTATCCGTCATGAATCCAAGGGTGCTCAATTAGTCTGTGGAACCAAGCGGTCTACTGGTTGCTATTATTGTTCTGTGCATCAATTGAAATTCAGAGTTTCCTCCAACGATCTCTTTAGAAGAACTGCAATTATTGTTGAAGTAAAGGCCTCAAAGAAAACTTTGGGGGGAGAAATACCTGCTGATTTTTGGAATTTTATTCCTTGTGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGGGTTTTATCACCTGCGCAGGTTATTTATTTGTTGAATGGTCTTGATCCAGACTTTATTGAAAAATATATTCCAAGAAAGGATTTGCTGAGTCTTAATTGCTTCCTGGTGACTCCAAATTGTCATCGTGTGACAGAAGTCCCTTATGCAATTTCAAGTGGAAGCCGATTGAGTTTTGATGACAGGACCCGATCTTGTAAGAAATTGGTTGACTTCAGGGGTTCAGCCAATGAGCTAAGTTCCCGTGTTTTGGATTGTCTGAAGATCTCTAAGGCAAGATGCTCAGCTCTAAATCCTGATAAAACTCCAAATAGTATTTTTGCTGATATCCAGCAAAGAAAGATTGGAGAAAATGCTTGCAATTCTTCTGGTTTAAAATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGATAGTTCATTCCGTACTGTGGTTGTTGGTGATCCAGACCTTGAGCTTAGTGAAATTGGTATACCTTGTCATATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTGAATAGGCAGAATAGGGAGAAGCTGCTTTATTGTTGTGAGCTACGCTTGTTAGAGAAGGGGCATATAAATGTCTACAGAAAGGGTAGTACAGTTCATCTGTTTAAAAAGGAAGATATACAAATAGGTGACAGATTTTATAGGCCTCTTGCTGATGGGGATAAAGTGCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACAGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAACCCACTCTGTTGTTCTCCATTTCGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCGCAATCAGTTACTGCAAGAGTTGAGCTCAATGAGCTGGTTGCTTTAGATAAGCAATTGATTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCCCAGGATAGTTTGACTGCTGCATATTTACTAATGGAAGATGGGGTCCTTTTGAATGTTTATCAAATGCAGCAGCTTCAAATGTTTTCAAACAAGAGATTAACACCTCCTGCTGTTATCAAAGCTCCATCAAGCAATAGCTCACTTTGGAGTGGCAAACAACTATTTAGCATGCTCTTGCCCTCTGATTTTGACTATTCTTTTCCTTCGGATGGTGTTGTTGTCAGTGATGGGGAACTTCTATCTTCTTCTGAGGCTTCTGGTTGGTTACGCGATTCTGACTACAATGTTTTCCAGAGTCTTGTGGAACATTATCAAGGGAAGACTCTAAACTTTTTGTATGCAGCGCAAAAAGTTCTGTGTGAGTGGCTGTCGATGACAGGTTTTAGTGTTTCACTGTCAGATCTGTATCTTTCATCTGATTCCTATGCACGTCAAAACATGATGGACGAAATCTTTTATGGCTTACAAGATGCCGAGCAGGCATGTAATTTCAAGCAGCTATTGTTGGATTATTATTGTGATTTTCTGTCAGGAAGTCTTCAAGAGAGTGAAGATGCTATGACTGTTAATGCAGATCGTCTGAATTATGAAAGACAAATATCTGCTGCTCTCAGTCAAGCCTCAGTTGATGCTTTTAGGCAAGTTTTTCGCAATATTCAAAGTTTAGCTGACAAATATGCATGTAAGAACAATGCTTTCCTTGCTATGATTAAGGCTGGAAGCAAGGGTAATTTGGTGAAATTAGTTCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTGTCATACAGACTACCCCGTCATCTTTCATGTGCTGCTTGGAATAGTCAAAAGTGTCTTGATTCAACCCAGATGTCTTCCGGTACCCTTGAATCTGTTCAGTCTTACATTCCATATGCTGTGGTTGAGAGCTCATTTTTAACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACCATGCAGACCTTCCTGGAACACTGACACGTCGACTTATGTTCTTCATGCGTGATTTGTATGATGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGAAGACTATGCTACAGGTGGTGAACCTGTTGGGGCACTTTCTGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAGTTAGTCTACTCCAAACATCACCTTTGCTGAATTTGAAAAATGTTCTGGAGTGTGGTTCAAGGAAAAGAAATGGTGATCAGACTGCGTCTTTATTTTTATCTGAAAAGCTTGGTAAACAAAGACATGGGTTTGAATATGCAGCTTTAGAAGTCAAGAATTATTTGGAACAATTGTTGTTCTCAAACATTGTTTCTACAGTGATGATAATGTTCACTCAACATGATGGCATCAGCCAAGAAAAATACAGTCCTTGGGTCTGCCACTTTCATTTAGACAAGGAAATTGTAGCAAGAAGAAAATTGAAAGTGCGTTCTATCATTGACTCTCTCTATCAGAGATATTACTCCCTGAGAAAAGAATCAAAAGTCTCTTTTATCAATTTGAAAATTTCAAGCAAGAAGTGTTCTGCTGATTCCATGGCTAAGGAAGGTGAAGACACTTCTATAGATAAAGAAGAGGGTGATGATTGCATCATGGTCACAATTGTTGAAAACTCTAAGAATCCTATACAACTGGATTCTATTCGGGACTTGGTGATACCTTTTCTTCAAGGAACAACAATAAAAGGATTTCTGGACATCAAGAAGGTTGATATTCTCTGGAATAATCAGTCAAAAGTAACAAATTCTTATAATGGTTCTTCCGGTGAACTGTTCTTAAGGGTTACTATGTCCAGCCAGGGTAACAATGGAAGATTTTGGGGTGTACTCATGAATTATTGTCACAAGATAATGCGTATAATTGACTGGACACGAAGTCATCCAGATAACATAAATCATTTCTCATCAGCCCATGGAATTGATGCAGGGTGGCAATACTTTTTCAATAGTTTGGCGTCTGCAACATCTGATACTAGCAAGTCCATCCTTCCTAAGCATCTGTGCCTTGTTGCCAATAGTCTGTCAGCTAGTGGAGAGTTCGTGGGATTAAATGCTAAAGGCATGGCAGGACAAAGAAAACATGCATCTGTTTCATCACCATTTGTGCAAGCATGCTTTTCAAATCCAGGTAGTTGCTTTATAAAAGCTGCCAAGTCTGGAGTCACAGATAATCTCCAGGGCATCTTGGATGCATTGGCTTGGGGAAACTGTCCATCTATGGGGACAAGTGGAGTGTTTGATATCATATATTCAGAGAAGGGACATCAGGTAGCTAAATCTGTAGATGTGTATGAGCTGCTAGAAGCCAGTTATGACAAGCCAAACAATAAAATTGGTACTCATTCTCACAAATATTCATCTGACAAATGCGGTTCTGAGTTTAGGCATAAAAATGGTTATGCCTTGAAAGAGAGAAAACATTGGAAAACCATTTTAAGAAATTTTGTGACGGTAAATGATATTCAGAAGTTGAGTTTTGCTTCGAGGTGCATATTGAACAAGTATTCAATTGATGAGCTGCTAAGTGTGAGTGACAGGTCAACAATTCTAAGGGTTTTGAATTTTCATCCTCGTAAAAGTGAGAAGTTTGGCATTGGACCAAAGGACATTAAGGTTGGATGGCATCCAAAATATAAGGAAACCCGGTGCTTCCATATAATACGAACTGATGGAACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGATATAGTTGATCCAAAAAAGTCAAAGATCCAGGAGAAAAAATGGCATGGTGACACCACGTAA 4341 0.39 MDDDLTNKAPSGVIKAIKFDVLTEEDIENISVLEINAVGQVTGSNLGFPNASEECTTCGSKDKKFCEGHFGVIKFPFVILHPYFMSEIVHILNKMCPVCKSIRHESKGAQLVCGTKRSTGCYYCSVHQLKFRVSSNDLFRRTAIIVEVKASKKTLGGEIPADFWNFIPCDAQQEENYVNRRVLSPAQVIYLLNGLDPDFIEKYIPRKDLLSLNCFLVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGSANELSSRVLDCLKISKARCSALNPDKTPNSIFADIQQRKIGENACNSSGLKWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELRLLEKGHINVYRKGSTVHLFKKEDIQIGDRFYRPLADGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPFRGDFDGDCLHGYIPQSVTARVELNELVALDKQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMFSNKRLTPPAVIKAPSSNSSLWSGKQLFSMLLPSDFDYSFPSDGVVVSDGELLSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARQNMMDEIFYGLQDAEQACNFKQLLLDYYCDFLSGSLQESEDAMTVNADRLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKNNAFLAMIKAGSKGNLVKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKCLDSTQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDIEDYATGGEPVGALSACAISEAAYSALGQPVSLLQTSPLLNLKNVLECGSRKRNGDQTASLFLSEKLGKQRHGFEYAALEVKNYLEQLLFSNIVSTVMIMFTQHDGISQEKYSPWVCHFHLDKEIVARRKLKVRSIIDSLYQRYYSLRKESKVSFINLKISSKKCSADSMAKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSIRDLVIPFLQGTTIKGFLDIKKVDILWNNQSKVTNSYNGSSGELFLRVTMSSQGNNGRFWGVLMNYCHKIMRIIDWTRSHPDNINHFSSAHGIDAGWQYFFNSLASATSDTSKSILPKHLCLVANSLSASGEFVGLNAKGMAGQRKHASVSSPFVQACFSNPGSCFIKAAKSGVTDNLQGILDALAWGNCPSMGTSGVFDIIYSEKGHQVAKSVDVYELLEASYDKPNNKIGTHSHKYSSDKCGSEFRHKNGYALKERKHWKTILRNFVTVNDIQKLSFASRCILNKYSIDELLSVSDRSTILRVLNFHPRKSEKFGIGPKDIKVGWHPKYKETRCFHIIRTDGTVEDFSYRKCILGALDIVDPKKSKIQEKKWHGDTT 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1688 1446 CDD RNAP_IV_RPD1_N 22 850 IPR040403 -
Aed11g1688 1446 Pfam Protein of unknown function (DUF3223) 1351 1422 - -
Aed11g1688 1446 Pfam RNA polymerase Rpb1, domain 2 314 471 IPR000722 GO:0003677|GO:0003899|GO:0006351
Aed11g1688 1446 Gene3D RNA polymerase II, clamp domain 3 113 IPR044893 -
Aed11g1688 1446 Gene3D - 660 803 IPR038120 -
Aed11g1688 1446 PANTHER DNA-DIRECTED RNA POLYMERASE 6 1340 IPR045867 GO:0003899|GO:0006351
Aed11g1688 1446 Pfam RNA polymerase Rpb1, domain 3 477 625 IPR007066 GO:0003677|GO:0003899|GO:0006351
Aed11g1688 1446 Gene3D RNA polymerase Rpb1, domain 3 481 627 IPR042102 -
Aed11g1688 1446 Gene3D - 1333 1424 - -
Aed11g1688 1446 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 7 1271 - -
Aed11g1688 1446 Gene3D RNA polymerase ii 347 399 - -
Aed11g1688 1446 Pfam RNA polymerase Rpb1, domain 4 695 753 IPR007083 GO:0003677|GO:0003899|GO:0006351
Aed11g1688 1446 Gene3D - 309 480 - -
Aed11g1688 1446 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 6 1340 - -
Aed11g1688 1446 SMART rpolaneu7 208 501 IPR006592 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1688 Aed-Chr11 20581686 20597677 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1688 K16250 - gmx:100810483 2618.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1688 11 20581686 20597677 Aed11g1688 11 20581686 20597677 ECH