Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1661 ATGGCAGCTGCGCAATACCGCTGCCCTGCGAGTCTGATATTCCGGTCCGACACTAGCGTTCGTTTGGGCCAGACTTCAACGCTAAAGAGCTTCGAGAATTCATGGATTGGAACTAAAGTTAGGGATTCCTCATGCAGTTTCAATCTGTCCGTTTCCCGGCGTCGCCGCCCCCTCGCCGCCACCGTCTCCTTCAGCCTCCCCACCGCAGAGCCAGAGCGTGCTTCTACTGGCCAAGAAATTCCCAAATGGTCTTCCAAGGCTATAAAATCGTTTGCAATGTCTGAATTGGAGGCGAGAAAACTCAAGTATCCGACTACTGGCAATGAAGCTCTTCTCATGGGGGTACTCATCGAGGGTACTAATCTAGCTGCTAAGTTTTTGCGAGCCCATGGAATTACGCTTCTCAAGGTGCGAGATGAAACTGTGAAGTTACTTGGAAAAGCTGATTTATTTTTCTTCAGCCCAGAACATCCTCCACTGACTGATGAAGCTCAGAGGGCCCTTGATTGGGCTGTTAATCAAAAAATAAAATCTGGTGATGGCGGGGAAATTACCACTGCACACATACTTCTTGGCATTTGGTCTGAAGTGGATTCTCCTGGTCACAAGATTCTGTCCACTCATGGCTTTAATGATGAAAAAGCTAAAGAGCTTGAGTCCTCAATTTCTAAACCTGGTTGTACGGATGGTTGA 693 0.4791 MAAAQYRCPASLIFRSDTSVRLGQTSTLKSFENSWIGTKVRDSSCSFNLSVSRRRRPLAATVSFSLPTAEPERASTGQEIPKWSSKAIKSFAMSELEARKLKYPTTGNEALLMGVLIEGTNLAAKFLRAHGITLLKVRDETVKLLGKADLFFFSPEHPPLTDEAQRALDWAVNQKIKSGDGGEITTAHILLGIWSEVDSPGHKILSTHGFNDEKAKELESSISKPGCTDG 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1661 230 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 15 229 IPR044217 -
Aed11g1661 230 Gene3D - 82 229 IPR036628 -
Aed11g1661 230 SUPERFAMILY Double Clp-N motif 82 215 IPR036628 -
Aed11g1661 230 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT2, CHLOROPLASTIC 15 229 - -
Aed11g1661 230 Pfam Clp amino terminal domain, pathogenicity island component 183 222 IPR004176 -
Aed11g1661 230 Pfam Clp amino terminal domain, pathogenicity island component 97 146 IPR004176 -
Aed11g1661 230 ProSiteProfiles Clp repeat (R) domain profile. 80 225 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1661 Aed-Chr11 20431864 20437336 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1661 - - gmx:100527844 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1661 11 20431864 20437336 Aed11g1661 11 20431864 20437336 ECH