Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1634 ATGGCAATGCACAAGAGCAGTTCAGGTTCAGCATTGGGCCCAGGAGGCTTGGACTTAACTCAAGCCTTCTTCAAGTCCATAATGAACGCTGCACCTTCTTCTCTCACTAAGCGCCACAACAAAATCTCCGTTGTTGGGGCAGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACCCAGGATGTCACCGACGAGCTCGTCCTCGTCGATGCCATTCCTGACAAACTCCGTGGCGAGATGCTGGACCTCCAGCATGCCGCGGCATTCCTCCCCCGCACCAGAATTCAAGCCTCCACCGACTACTTCGTCACGGAGGGCTCTGATCTCTGCATTGTCACCGCCGGGGCCCGCCAAATCAACGGCGAGTCCCGGCTCAACCTCCTAGAAAGGAATGTGACACTCTTTAAGAAAATCATACCTCCTTTGGTTCGTTACTCCCCAGACACGATTCTCCTCATCGTTTCAAATCCCGTGGACGTGCTCAGTTACGTGGCATGGAAGCTTTCAGGGTTCCCTTCAAACCGCGTCATTGGCTCTGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCACAAGATGTCCAGGCTTTTATAGTGGGGGAACACGGTGACAGCTCAGTGGCTTTGTGGTCTAGTATAAGTGTTGGGGGTGTTCCGGTGCTGAGCTTTTTGGAGAAGGAAATGTTGGAAAACATACACAAACAAGTTATACAGAGTGCTTATGAAGTTATCAGTCTGAAAGGGTACACCTCTTGGGCGATAGGATACTCTGTAGCAAACTTGGCGCGAGCCATTCTTAGGGACCAAAGGAGGGTCCACCCTGTATCGGTTCTTGCCAAGGGTTTTTATGGAATTGATGATGGGGAAGTGTTCCTTAGCTTGCCCGCACAACTCGGAAGAGCAGGGGTTTTGGGTGTAACAAATGTGCACTTCACTCAACTAGAGACTCAGAGCCTTAGGGACTCAGCTCAGACAATCCTTCAATTGCAAAATCAGTTGCCTATTTGA 1038 0.5067 MAMHKSSSGSALGPGGLDLTQAFFKSIMNAAPSSLTKRHNKISVVGAGNVGMAIAQTILTQDVTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYFVTEGSDLCIVTAGARQINGESRLNLLERNVTLFKKIIPPLVRYSPDTILLIVSNPVDVLSYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKEMLENIHKQVIQSAYEVISLKGYTSWAIGYSVANLARAILRDQRRVHPVSVLAKGFYGIDDGEVFLSLPAQLGRAGVLGVTNVHFTQLETQSLRDSAQTILQLQNQLPI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1634 345 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Aed11g1634 345 SUPERFAMILY LDH C-terminal domain-like 180 343 IPR015955 GO:0003824|GO:0016616
Aed11g1634 345 Pfam lactate/malate dehydrogenase, NAD binding domain 41 179 IPR001236 GO:0016491
Aed11g1634 345 PIRSF Lac_mal_DH 36 344 IPR001557 GO:0016616|GO:0019752
Aed11g1634 345 CDD LDH_1 37 342 - -
Aed11g1634 345 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 44 336 IPR011304 GO:0004459|GO:0005737
Aed11g1634 345 Gene3D - 21 181 - -
Aed11g1634 345 Hamap L-lactate dehydrogenase [ldh]. 39 344 IPR011304 GO:0004459|GO:0005737
Aed11g1634 345 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 337 IPR022383 GO:0016616
Aed11g1634 345 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 3 345 - -
Aed11g1634 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 179 IPR036291 -
Aed11g1634 345 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Aed11g1634 345 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Aed11g1634 345 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Aed11g1634 345 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Aed11g1634 345 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
Aed11g1634 345 PANTHER L-LACTATE DEHYDROGENASE 3 345 - -
Aed11g1634 345 Gene3D - 182 343 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1634 Aed-Chr11 20270900 20272015 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1634 K00016 - gmx:100818856 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1634 11 20270900 20272015 Aed11g1634 11 20270900 20272015 ECH
Aed11g1634 11 20270900 20272015 Aed6g0536 6 4570013 4571882 PCT