Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1630 ATGGCGGAGCCCGGAGACAGGGAAGTGATTATAGGAAGAAGTGATGGAGAAAAAGAGGAGTCATGTTCTGGTTTTCAGGGATTGAAGCTTGATAGTGGTGGTAAGAGTAGAACCAAAAGCATTCATCCCCCGATTGAAACGCATTGGGATCTGCATTCAGCAGGAAGAGGAGGGAAAAAGGCTTCGTCCCCTATCAAGTCACTCTTGTCTTACCCGCTCATGAAATTTAGGAAGACTAAAAGCCTTGTAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTCGAGTCTTTTCGCCAAATGCTTTTATTAGAAGGCCTCTTGCCACCTAAGCACGATGATTATCACACTCTTCTCAGGTTTCTGCGCATGAGGGATTTCGACATGACAAAATCAAAAGAGATGTTCCAAAATTATCTCAAATGGCGCAAGGAGTTTCGAGTGGACGTGCTTTCAAAGGAATTCAATTTCACGGAGTACGATGAAGTGAAGAAATGCTATCCTCATGGATACCACGGAGTTGATAGATACGGCAGACCGGTGTATATGGAGAGAATTGGGATGGTAGACCTGAACAGACTGGGGCAAGTAACCACGTTTGAAAGGTTTATAAAACATCATGTGTCGGAGCAAGAAAAAACTCTCAAAGTAAGATACCCTGCTTGTTCTCTAGCTGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATGTCTAATTTCTCAAGGCCCGCAAGATACCTCTTCATGGAAATTCAGAAAATCGATAGCTGTTACTATCCTGAGACTCTAAATCAGCTCTTTATTATTAATGCCGGATCTGGGTTTAGAATGCTGTGGAAAGCAGTTAAGACATTCCTAGATGTACGCACAGTGGCAAAAATTCAAGTGTTAGGTTCTAATTATGTCAGCGCTCTACTTGAGGCTATTGATCCAAGTATCAACCTGCATGAATACAATAATTTGCCAACTTTTCTGGGTGGTAATTGCACATGTTCCGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGATTGTTAATTTGAGAGAAGAGATTGATGGTAAATGCGAAGATGGTGATGTGGATATAGAAGATTCCTCGATGCCCAAAAAGGTTGACATGCAAAACAAAGATGGCAATACTAGTGAGGAAGCAGCATGTGTGGGATCAGACTTGGCATGTAATTGTAGATTAGCATTGCAAAAAATTGATTGCCTTGAAGCTAGTCTTGGAGACATCAAGAATCAGAAAATCAAGTCGTTGGAAGATGCACTCCAGGATACCAAGATGGCCTTGAAAGAACATGCACAACACGAGGAACAACCAAAAACGTAA 1398 0.4185 MAEPGDREVIIGRSDGEKEESCSGFQGLKLDSGGKSRTKSIHPPIETHWDLHSAGRGGKKASSPIKSLLSYPLMKFRKTKSLVMILEGARDPKDKQIVESFRQMLLLEGLLPPKHDDYHTLLRFLRMRDFDMTKSKEMFQNYLKWRKEFRVDVLSKEFNFTEYDEVKKCYPHGYHGVDRYGRPVYMERIGMVDLNRLGQVTTFERFIKHHVSEQEKTLKVRYPACSLAAKRHIASTTSILDVNGVGMSNFSRPARYLFMEIQKIDSCYYPETLNQLFIINAGSGFRMLWKAVKTFLDVRTVAKIQVLGSNYVSALLEAIDPSINLHEYNNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIQIVNLREEIDGKCEDGDVDIEDSSMPKKVDMQNKDGNTSEEAACVGSDLACNCRLALQKIDCLEASLGDIKNQKIKSLEDALQDTKMALKEHAQHEEQPKT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1630 465 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 162 343 IPR001251 -
Aed11g1630 465 SMART sec14_4 162 340 IPR001251 -
Aed11g1630 465 Pfam CRAL/TRIO domain 170 328 IPR001251 -
Aed11g1630 465 MobiDBLite consensus disorder prediction 1 42 - -
Aed11g1630 465 SMART CRAL_TRIO_N_2 117 142 IPR011074 -
Aed11g1630 465 Gene3D - 151 383 IPR036865 -
Aed11g1630 465 PRINTS Cellular retinaldehyde-binding protein signature 289 308 - -
Aed11g1630 465 PRINTS Cellular retinaldehyde-binding protein signature 120 142 - -
Aed11g1630 465 Coils Coil 439 462 - -
Aed11g1630 465 MobiDBLite consensus disorder prediction 1 24 - -
Aed11g1630 465 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 33 462 - -
Aed11g1630 465 SUPERFAMILY CRAL/TRIO domain 162 364 IPR036865 -
Aed11g1630 465 Gene3D - 79 149 - -
Aed11g1630 465 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 33 462 - -
Aed11g1630 465 CDD SEC14 163 338 IPR001251 -
Aed11g1630 465 SUPERFAMILY CRAL/TRIO N-terminal domain 90 157 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1630 Aed-Chr11 20243157 20245941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1630 121 334 Acyl Lipid Metabolism Gene Families AT5G47730 29.630 2.88e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1630 - - gmx:100797170 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1630 11 20243157 20245941 Aed11g1630 11 20243157 20245941 ECH