LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed11g1567	ATGGCTCTAACACTTCGATCTTCAGTTTCCCTCGTCAACAAGAAAGAAACCAAACTCCCAAAAGCCAAGGACGAGGTTCCAACCAAAGTGTTTTACTTTGCAAAAACCAACCCATCTTTCCGTCTCAGAGCAAAGAGTTCCATGCAACAAGCACATGTCACACGCGACAACAACAACTTCAACTCCGAAGTAATGACGTCAAACGAGAAAAGGGAGAAGCTTCACGCGCCATCTCTTGCACATAGTCACAGTGATTCAACGAGAGTACCCGTGTTCGTGATGCTGCCATTGGACACAGTAACAATGGGGGGGACTTTGAATAAGCCGAGAGCAATGAATGCTAGTTTGATGGCCCTGAAGAGTGCAGGAGTGGAAGGAGTGATGGTAGATGCTTGGTGGGGTTTGGTGGAAAAAGAGGGACCCTTAAAGTATAACTGGGAAGCCTATGCTGAACTTGTGCACATGGTACAAAGGCATGGCTTGAAACTTCAGGTTGTCATGTCTTTCCATCAATGTGGTGGAAATGTTGGAGACTCCTGCAGCATTCCTCTGCCTCCATGGGTGTTGGAAGAAATGAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCATTGGGCTGTGATTCAATGCCTGTTCTGAGAGGAAGGACACCCCTTCAAGTTTACTCTGATTACATGAGGAGCTTCCGTGACAGATTCAGAAACTATTTGGGCAGTGTTATCATTGAAATTCAAGTGGGGATGGGTCCTTGTGGAGAGCTGAGATATCCATCTTATCCAGAAAGCAATGGAACATGGAGGTTTCCTGGAATTGGAGAATTCCAGTGCTATGACAAGTATATGAGAGCTTCCTTGGAAGCATCAACTGAGAGCATTGGGAAGAAAGAGTGGGGAAAAAGTGGACCACATGACTCAGGGCAGTACAACCGTTTTCCTGAGGACACTGGATTTTTCAAAAGGGAGGGAACATGGAACACAGAATATGGAAAATTCTTCCTTAACTGGTACTCCACCAAACTTGTTGAACACGGTGAGAGAATCCTTGTATCAGCCAAAGGCATATTCAACTCATGTGGGGTGAAACTATCTGCCAAAGTAGCTGGAATCCACTGGCACTACAAGGCAAGGTCACATGCGGCTGAGCTTACTGCAGGCTATTACAACACACGGTTTCGCGATGGATACCTACCAATAGCAGAAATGCTGGCAAAACATGGAGTTGTGTTGAATTTCACCTGCATGGAAATGAGGGATAGAGAGCAACACGAACATTGTTCCCCAGAGGGGTTGGTTCATCAAGTGAAGATGGCAGCCAGAACAGCAGGAGCAGAACTTGCTGGGGAGAATGCACTTGAGAGATATGATGAAGGTGCATTTTCACAAGTTTTGTCAACAAGTAACTCTGGTTCTGGTTCTGGATTGGCTGCATTCACTTATCTGAGAATGAATAAGAGGTTGTTTGAGGGAGAAAATTGGAGGCACTTTGTGGAGTTTGTGAAAAGCATGTCTGAAGGTGGTAGGAGACAAAGGCTTCCACAATCTGATTCTTCTGGGACTCATCTTTACGTTGGACACATCACAGGAATTCCGAATAAGCAGAAAGAGCAAGCTCAAGAGGTTGCTCTTGTGTGA	1659	0.4575	MALTLRSSVSLVNKKETKLPKAKDEVPTKVFYFAKTNPSFRLRAKSSMQQAHVTRDNNNFNSEVMTSNEKREKLHAPSLAHSHSDSTRVPVFVMLPLDTVTMGGTLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKEGPLKYNWEAYAELVHMVQRHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSMPVLRGRTPLQVYSDYMRSFRDRFRNYLGSVIIEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASTESIGKKEWGKSGPHDSGQYNRFPEDTGFFKREGTWNTEYGKFFLNWYSTKLVEHGERILVSAKGIFNSCGVKLSAKVAGIHWHYKARSHAAELTAGYYNTRFRDGYLPIAEMLAKHGVVLNFTCMEMRDREQHEHCSPEGLVHQVKMAARTAGAELAGENALERYDEGAFSQVLSTSNSGSGSGLAAFTYLRMNKRLFEGENWRHFVEFVKSMSEGGRRQRLPQSDSSGTHLYVGHITGIPNKQKEQAQEVALV	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed11g1567	552	SUPERFAMILY	(Trans)glycosidases	88	514	IPR017853	-
	Aed11g1567	552	Pfam	Glycosyl hydrolase family 14	92	507	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	Gene3D	Glycosidases	79	548	-	-
	Aed11g1567	552	ProSitePatterns	Beta-amylase active site 1.	170	178	IPR018238	GO:0000272\|GO:0016161
	Aed11g1567	552	PANTHER	BETA-AMYLASE	1	552	-	-
	Aed11g1567	552	PANTHER	-	1	552	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	144	162	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	166	187	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	369	385	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	386	397	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	404	427	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	439	461	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	258	280	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	123	137	IPR001554	GO:0000272\|GO:0016161
	Aed11g1567	552	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	333	352	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed11g1567	Aed-Chr11	19858633	19861144	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed11g1567	1	552	Glycoside Hydrolase	AT4G17090	69.856	0.0	811

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed11g1567	K01177		-	gmx:100786079	1027.31

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed11g1567	11	19858633	19861144	Aed11g1567	11	19858633	19861144	ECH