Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1560 ATGGACTCGCAACAGAGCAATCTATTCGACACCGCTTCGCAACCCGACACCGGCAACGACGCCTACACCTTCCTCGAATTTAACACCCAGGGCGAGGATTTCGACTACCCTGAGTTTCGAGACCCGATTAGGTCGCCAGTGGCCTGGCCCACGCCGTCTGATTCGCTCGCTGACCCGTCGGAGCGAGGCACCGGCGGTTCTGATCACCAGTCCGACGCCTCGCCGGTCTCTGCGGCTCCCGGGAGTGCCACAAAGGGCGGCCGGTCGGGGAGCGGCGGCGGGAACAGCAGCCAGGTGGTGGATGCGCTCGCTGCGGGGATGAGCGGGTTGAATTTCGAGGACACTGGGGATGACGATAACTATGAGTATGGGAAAGGGGATTTCACTGAACACGCTTGTCGCTATTGCGGCGTTTCCAATCCCGCGTGTGTTGTGAGGTGCAATGTGCCTTCGTGTCGCAAGTGGTTCTGTAATTCTCGGGGGAACACTTCGGGATCGCATATCGTCAATCACCTGGTTCGGGCTAAACACAAGGAAGTCTGCCTTCACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAATTGTGGATGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCAAAGACAGAAAGTGTAGTTGTCCTTCTTTGTCGTGAACCTTGCTTGAGTGTTAATGCATTGAAGGATATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATACCATCTGAACAGGAGCAGTTAAGGGCTCGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCCGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAACGTATTTGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTCACTATCCGATGGGACATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTATTTCCAAAGGAAGATAACGAGTTGCGCCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCTAGTCAGGGGGTTCCAGTTGATGTTAACCATGGCTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGTTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTTAGTGGGTATATTTATCATCACTTATTGGGTCATGAAGTTGAGGTTCAAATGGTGCGTAATGCCCTGCCTCGTCGCTTTGGTGCACCTGGGCTTCCAGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACCGTAACATCTGCAGCACTTGTATATCACATGGCCAAGCAAGGTCAGGGGCAGGTTTTGGTATGTGCACCCAGTAATGTAGCTGTGGACCAGCTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGCGCAAAGTCAAGGGAAGCTGTGAGTTCTCCCGTTGAGCATTTAACTCTCCACTATCAGGTTCGACATCTTGACACATCAGACAAGAGTGAACTTCATAAGTTACAACAGCTGAAGGATGAGCAAGGCGAACTTTCTAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACGGAAAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCCACTCAAGCAACTGAACCTGAGTGCCTCATACCTTTGGTTCTTGGAGCAAAACAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCTCGTGCTGGGTTAGCACAGTCACTTTTTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGGTTCAGTACCGTATGCATCCATGCCTTTTCGGAATTTCCCTCAAACAGCTTCTATGAAGGTACTCTGCAAAATGGAGTTACTGTTAATGAAAGGCAATCTTCGGGAATTGATTTTCCTTGGCCAGTGCCAAACCGTCCTATGTTTTTCTATGTTCAGATGGGACAAGAAGAGATAAGCGCTAGTGGAACATCTTATTTAAATAGGACCGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACGCCTTATGAGGGGCAGAGAGCTTATATTGTGAACTATATGTCCAGAAATGGTGCTCTTAGGCAGCAGCTTTACAAGGAGATTGAGGTTGCTAGTGTCGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTGTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGATTCCTGAATGATCCTAGGAGGCTCAATGTTGCTTTGACACGAGCAAGATATGGCATTGTTATTTTGGGAAACCCTAAAGTCTTGAGCAAGCAGCCTCTATGGAATAGTTTATTGACTCACTACAAGGAACATGAGTGCTTGGTTGAAGGTCCTTTAAATAACTTGAAGCAAAGTATGGTTCAGTTCCAGAAACCTAAGAAGATTTACAATGAACGGAGGCTTTTTTATGGTGGTGGACCTGGAATTGCGGCTAATGATAATTTTGGTAACGTTGGATCTGGAGCTGGCACAAGTTCAGACCGGAGGAGCAGTCGGGGAAGGGGATCTTATATACCTCCTGGTCCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGATATCCTGTGGCAAGGGTTCCATTGGCTCCTTTTCATGGTGGTCCCCAATCTCAACCATATGCCATTCCATCTCGTGGGGCTGTTCATGGACCCGTTGGGGCAGTTCCACATGTTCCATCTCCAGGGAGTCGAGGTTTTGGGGCAGGGAGAGGCAATTCTGGTGCTCCAATTGGCAATCATCTACCACATCAACAAGGAACCCAACAGTCTATTGGGAATATTGGATCTACATTTAATTTCCCTGCTCTAGAGAATCCTAACAGCCAGCCATCTGTTGGTGGTCCATTATCTCAACCTGGGTTCGCCAACAATATGCCTGTTCAAGGGGCTGGCCAGTCATTTCGTGATCAATTTTCTATGCCTGGAATGTCCCAGGACTTCTTGGGCGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTCACTGATTTCTCTACACAGGCTTCTCAAAGTGGATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAATTTTCTTAACCAGAATTCTCAAGCTGGATATTCTCGCTTTGGTTCTGGAAATGACTTTATGTCTCAGGACTACATGGGCCATGGATCACAAGGCCTTTTCACTCAGGTGGGATTCAGTGATCCCTTACAAGATGATGCAACACAAAGCCATTTCAGTGTGGCAAACGCCAACCCTCTTCAGTCCCAGATGAATTCTCTTTACTCGCAACCATTTGCTCACTACAACACACAGCCACTTAACATGCAGGCTACCCAACAGCAGCCTCAGGCTCAGAACTCCCAAAATCAGAAAATTCACTATAACGGTTGA 3792 0.4641 MDSQQSNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPSERGTGGSDHQSDASPVSAAPGSATKGGRSGSGGGNSSQVVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRFSTVCIHAFSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDNFGNVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVARVPLAPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQSIGNIGSTFNFPALENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFSDPLQDDATQSHFSVANANPLQSQMNSLYSQPFAHYNTQPLNMQATQQQPQAQNSQNQKIHYNG 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1560 1263 Pfam Type III restriction enzyme, res subunit 487 549 IPR006935 GO:0003677|GO:0005524|GO:0016787
Aed11g1560 1263 CDD SF1_C_Upf1 718 904 IPR041679 -
Aed11g1560 1263 MobiDBLite consensus disorder prediction 952 967 - -
Aed11g1560 1263 Pfam RNA helicase UPF1, 1B domain 336 425 IPR040812 -
Aed11g1560 1263 Gene3D - 715 925 IPR027417 -
Aed11g1560 1263 CDD DEXXQc_UPF1 481 713 - -
Aed11g1560 1263 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 490 622 IPR014001 -
Aed11g1560 1263 CDD 1B_UPF1-like 337 424 IPR040812 -
Aed11g1560 1263 PANTHER DNA2/NAM7 HELICASE FAMILY 107 1031 IPR045055 -
Aed11g1560 1263 Pfam AAA domain 581 684 IPR041677 GO:0004386
Aed11g1560 1263 Gene3D - 445 713 IPR027417 -
Aed11g1560 1263 Pfam RNA helicase (UPF2 interacting domain) 131 284 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Aed11g1560 1263 Gene3D - 337 425 - -
Aed11g1560 1263 MobiDBLite consensus disorder prediction 1 26 - -
Aed11g1560 1263 Pfam AAA domain 694 887 IPR041679 -
Aed11g1560 1263 MobiDBLite consensus disorder prediction 57 78 - -
Aed11g1560 1263 Gene3D - 567 619 - -
Aed11g1560 1263 CDD ZBD_UPF1-like 132 254 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Aed11g1560 1263 MobiDBLite consensus disorder prediction 948 991 - -
Aed11g1560 1263 MobiDBLite consensus disorder prediction 1 98 - -
Aed11g1560 1263 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 107 1031 - -
Aed11g1560 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 938 IPR027417 -
Aed11g1560 1263 MobiDBLite consensus disorder prediction 997 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1560 Aed-Chr11 19724557 19736220 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1560 K14326 - gmx:100795594 2427.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1560 11 19724557 19736220 Aed11g1560 11 19724557 19736220 ECH