Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1557 ATGGCGTCAGTGTCAGCTCTTGCAAAGTACAAGCTGGTGTTCTTGGGTGATCAGTCTGTGGGAAAAACCAGCATCATCACTCGCTTCATGTATGACAAGTTTGACAACACTTATCAGATCGAACTGTTCGGCTACAGCTGTGGCCGTCAAACTTTTCTGAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGACCTCGTGGATAAGAGGCAAGTCTCTACAGAGGAAGGGGAAGCTAAGTCTCGTGAACTAAACGTCATGTTTATTGAAGCTAGTGCCAAAGCTGGCTTTAATATAAAGGCTCTGTTTCGAAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCCTCCACAAAACAAGAAGACATGGTTGATGTGAACCTAAGATCTTCTGGTGGCCGGCAATCTGAAGATCAGTCCGGTGGATGTGGTTGCTGA 486 0.4486 MASVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQIELFGYSCGRQTFLNTSKWIEEVRSERGSDVIIVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLRSSGGRQSEDQSGGCGC 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1557 161 SMART ras_sub_4 7 128 - -
Aed11g1557 161 Pfam Ras family 49 124 IPR001806 GO:0003924|GO:0005525
Aed11g1557 161 Gene3D - 5 44 IPR027417 -
Aed11g1557 161 ProSiteProfiles small GTPase Rab1 family profile. 1 161 - -
Aed11g1557 161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 136 IPR027417 -
Aed11g1557 161 PANTHER GTP-BINDING PROTEIN RAB6 48 161 - -
Aed11g1557 161 PANTHER GTP-BINDING PROTEIN RAB6 1 40 - -
Aed11g1557 161 Gene3D - 45 156 IPR027417 -
Aed11g1557 161 SMART rab_sub_5 10 128 - -
Aed11g1557 161 PANTHER DRAB5-RELATED 48 161 - -
Aed11g1557 161 SMART rho_sub_3 12 127 IPR001806 GO:0003924|GO:0005525
Aed11g1557 161 Pfam Ras of Complex, Roc, domain of DAPkinase 11 39 - -
Aed11g1557 161 PANTHER DRAB5-RELATED 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1557 Aed-Chr11 19714432 19717259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1557 K07893 - gmx:100790511 257.684