Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1345 ATGCGGATGCAGTTGAGGCCGTTGTTTCACGAGGCTAACCTGTTGAACGGGTTAACCTGGCAAGTGCAAGCTCGTTCCTATGCTCGTCATCGTGAACCATTTCCCGCCAAAGTTTCTCACTACCTCCACCGTGCAAAACTCATCGACTCCATTAGACTCGCTCTACGGTCCAACACCCCCAACTCCTCCCTTCCCTCTCTCATAAACCACCGTCTTTTGGACTCTTTTGTCGTCACTCATGCCCTTCGTTCTGCCCCTTCTGCAGATTCCGCTCTCTCCCTTGTCCATGCCCTCGAAAAAAGTTCCCATTTTTCCCACACCCACCACACGCTCCATGCACTTGCCACTGTGCTTGCCAAGTCTGGTCGAAGCTCTGAGCTCAAATCCCTCGTTGATGCTATCCGCGCCAACCGCTTCGGCTCTGTTCAGATCAGTTTCATGAATCTCATGCAGTGGCATGCTGCAGCTAGGGACCTTGACACTGTTCTTCAGGTGTGGGAACAGTATACACTTGAGAATAACCATCTCTGCACCGAATCGTATAACATTGTTATGACTCTTTATGCTCAAATGGGAAAGGACTCCGAGGCTGTTCGAGTTTTTCACAGGATGATTGATGAAGGGTCTCTTCCAAATTGCAGAAGCTATACTGTGATAATCGAGCACCTTGTGAAGTCGCAGAAGTTATCCGAAGCATTGGAGGTTTTTAACCTGTTGCCTTCAATGAGGATCAAACGCACCTTGAAACAGTACTCCATTCTGCTTGAGAGTTTTGCAGGTAGCAAACACTTTGATGAAGTGAGAATTTTAGTTGAGGAAATGCAGGTTGATGGAATATTGCCTAGTAGAGGCATGGGTCTGTTGCTGCAGCAGATGAAGGAGGAAGGAATTCTTGAAGGCAAGGAACAGTTATTGAAAGAAAATCTGCCAGATGAGAGAATCAGGAGTGCAAGTTATTCTATTGATAGTGGTGATGAGGATGAGGATGAGGATGAGGATAAAAATGATAATGAGGGCCAAGATGAGAATATAAGTGATGCTTGTCAATGTGATCATGTTGATGGAATTCATTTAAAACCATGGATGGACCCACGGGCTTTGACCAGTGCCTTGCGGAATTGGAGTCCTGATGAGGTAGCAGCACTAGAGAGTGCCAACTTTGTGTGGACAACAAGGTTGGTTTGCAAGATGCTTAGAAATTTCAAAACACCAGAAGCTGCATGGAGTTTCTTCTGTTGGGTTGCTAATCAACATGGATTTACTCATGACATATACACGGTACAAAGAATCATGACCCTTCTAGCACGCCATGGACGTGCTGAATTGGTTGATAGACTCATCTCCAAGATCAGAATGGAGGGAATGAGACTACCATTTAGCACCATCAGGCTGATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTGAAGGTTTTCAATGATGACCGAATACTTTGCGGTCCCATATCAAATGTTAACTTGATGCTTCTGTATTCCTCTCTACTAAGAACATTGACAAAATGTGGAAGAAATTCTGGTGCCCTGGATATGCTTGATGACATGATTTTAAATGGTATTTGCCCAGATATCCAGACATTTTCAGGCCTAATGCACTATTTTTCGCAGCTTGGAGATATAAAAACAGTGCAGAAGCTCTTTTCAATGGTTAGGCAGAGCGGTCTAGAGCCAGATGCTTATTTGTATAAGGTATTAATCCAAGGTTATTGCAAGTCAAAAAGAGCTGCACTAGCATGGAGACTATTTGAAGATATGAAGAATTCAGGTTTGGTTCCTGACTCTGCCACCAAAGAGTTGCTAGTAAAAAGCCTCTGGATAGAGGGGAAACGGAGAGAGGCTGCTGCAGTGGAAGAAAGTTATGAGGAAATAACTACGGTCCTTCCACTTGCATTGCAGGGTCATGTATGGACTGTCAGCTCTGCAGATCTTACAAGAGTTTATAATATTTATTCAAATTCTTTTGCGTAA 1995 0.4416 MRMQLRPLFHEANLLNGLTWQVQARSYARHREPFPAKVSHYLHRAKLIDSIRLALRSNTPNSSLPSLINHRLLDSFVVTHALRSAPSADSALSLVHALEKSSHFSHTHHTLHALATVLAKSGRSSELKSLVDAIRANRFGSVQISFMNLMQWHAAARDLDTVLQVWEQYTLENNHLCTESYNIVMTLYAQMGKDSEAVRVFHRMIDEGSLPNCRSYTVIIEHLVKSQKLSEALEVFNLLPSMRIKRTLKQYSILLESFAGSKHFDEVRILVEEMQVDGILPSRGMGLLLQQMKEEGILEGKEQLLKENLPDERIRSASYSIDSGDEDEDEDEDKNDNEGQDENISDACQCDHVDGIHLKPWMDPRALTSALRNWSPDEVAALESANFVWTTRLVCKMLRNFKTPEAAWSFFCWVANQHGFTHDIYTVQRIMTLLARHGRAELVDRLISKIRMEGMRLPFSTIRLIIDFYGISKNADAALKVFNDDRILCGPISNVNLMLLYSSLLRTLTKCGRNSGALDMLDDMILNGICPDIQTFSGLMHYFSQLGDIKTVQKLFSMVRQSGLEPDAYLYKVLIQGYCKSKRAALAWRLFEDMKNSGLVPDSATKELLVKSLWIEGKRREAAAVEESYEEITTVLPLALQGHVWTVSSADLTRVYNIYSNSFA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1345 664 MobiDBLite consensus disorder prediction 316 346 - -
Aed11g1345 664 Gene3D Tetratricopeptide repeat domain 80 349 IPR011990 GO:0005515
Aed11g1345 664 Pfam PPR repeat family 178 224 IPR002885 -
Aed11g1345 664 Pfam PPR repeat family 566 612 IPR002885 -
Aed11g1345 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Aed11g1345 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Aed11g1345 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Aed11g1345 664 Pfam PPR repeat 501 529 IPR002885 -
Aed11g1345 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Aed11g1345 664 MobiDBLite consensus disorder prediction 323 339 - -
Aed11g1345 664 Gene3D Tetratricopeptide repeat domain 368 490 IPR011990 GO:0005515
Aed11g1345 664 Gene3D Tetratricopeptide repeat domain 496 650 IPR011990 GO:0005515
Aed11g1345 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Aed11g1345 664 TIGRFAM PPR: pentatricopeptide repeat domain 215 245 IPR002885 -
Aed11g1345 664 TIGRFAM PPR: pentatricopeptide repeat domain 570 603 IPR002885 -
Aed11g1345 664 TIGRFAM PPR: pentatricopeptide repeat domain 180 213 IPR002885 -
Aed11g1345 664 TIGRFAM PPR: pentatricopeptide repeat domain 501 533 IPR002885 -
Aed11g1345 664 PANTHER OS01G0167750 PROTEIN 5 663 IPR044175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1345 419 649 Glycosyltransferase AT1G05670 27.039 7.51e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1345 - - gmx:100779372 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1345 11 18229208 18231202 Aed11g1345 11 18229208 18231202 ECH