Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1306 ATGGGGGACTTCAACACCAACAACAGCGCCAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGTACCAAAGCCCAGAACCGTTCCAACGTCCTTCAGCTTAAATTGATTGGACAGAGTCACCCAACTGGTCTCACTGCGAACCTATTGAAGCTCTTCGAGCCTAGGCCTCCGTTGGAGTACAAACCGCCTCCGGAGAAACGGAAATGCCCACCGTTAACAGGGATGGCACAATTTGTGAACAAGTTTGCCGAGCCTGGCGATTCCGAATATGCTCCTCCTGTGCCAGAAGCCGAAACTCCTGGACAAAAAAGAGCCAGAATACACAAACTAAGACTAGAAAAGGGAGCTGCTAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACATAATGACCCAAATGTATCTGGAGATCCATACAAGACATTGTTTGTGGCTAAACTCAGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTAGGTATTTTCGAATATCCCCAAGGGGATTCGTTTCCACTTAGTTCCTCTGTTAATTTATGTGGATTAAGAGATCTTCTGAGGGCCTGGGTTTCTCTAGGAATTCTGTTAGCAGTAGGTATAGTATCTAAGAATACATCCCTGGTTCGATTAGTTGCTGACAAAGACACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTAGGTGGTGGCCTTGGTACTACTAGAGTTGGGGGTGAAGAAGTTAATCAGCGTCATTCTGGGAGGGAGCAACAACAGTCTCGTTCTGAAGAACCAAGAGTGCGGGAGGACCGGCATGGTGATAGAGACAGGGAAATATCTCGTGAAAGGGGTGAAAGAGGTAGGGATAGAGACAAAGAACGGGAGCGATCACGTGAACATTCTCATGAAAGGGTCAGGGATCGTGATCATAGAGAGGATAGACACCACAGAGACCGAGATAGGACCAGGGACAGAGATAGGGAAAGAGATAGAGACCGTGGACGTGATCGAGATAGAGCACGGGACCGTGATCGTGAGCGAGGGAGGGACCGTGATCGGGATCGAGAATATGATCGACATCGTGAGAGGGATAGAGATTATGAAGTTGGCGAGACTGATAGAGGACGCTCACGTGATAGGGAATCTGATTATGATCGTGCTGAATCTAAACATGGGGAAAGGAATCAAGAGTATGAGCCTGAGGATGATGATGGTAGGCATAAGCAGTATGAGCATGGACGTAGGCATGCAGACCCTGATCATGACCCTGAGCAGTATGAACACTACAATCATGGAGATGACCGTGGTGACCATTACAATCAGTATCCTGACCATGATAGGATGGAAGATGACTACCACGTAGGACGTGCAACATCTGAATCACATGAAAAGGAGAGAAGTCATGATATGGACCGTGAATATCGACTCAAAGAGAGATCACATTCCCGGGAGTATGATTACTAG 1608 0.4757 MGDFNTNNSANNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVNKFAEPGDSEYAPPVPEAETPGQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVGIFEYPQGDSFPLSSSVNLCGLRDLLRAWVSLGILLAVGIVSKNTSLVRLVADKDTNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRVREDRHGDRDREISRERGERGRDRDKERERSREHSHERVRDRDHREDRHHRDRDRTRDRDRERDRDRGRDRDRARDRDRERGRDRDRDREYDRHRERDRDYEVGETDRGRSRDRESDYDRAESKHGERNQEYEPEDDDGRHKQYEHGRRHADPDHDPEQYEHYNHGDDRGDHYNQYPDHDRMEDDYHVGRATSESHEKERSHDMDREYRLKERSHSREYDY 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1306 535 MobiDBLite consensus disorder prediction 276 535 - -
Aed11g1306 535 PANTHER - 13 175 - -
Aed11g1306 535 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 264 IPR000504 GO:0003723
Aed11g1306 535 PANTHER - 221 416 - -
Aed11g1306 535 CDD RRM_snRNP70 144 282 IPR034143 GO:0030619
Aed11g1306 535 SUPERFAMILY RNA-binding domain, RBD 138 292 IPR035979 GO:0003676
Aed11g1306 535 MobiDBLite consensus disorder prediction 296 535 - -
Aed11g1306 535 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 13 175 - -
Aed11g1306 535 Gene3D - 132 305 IPR012677 -
Aed11g1306 535 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 271 IPR000504 GO:0003723
Aed11g1306 535 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 221 416 - -
Aed11g1306 535 SMART rrm1_1 146 267 IPR000504 GO:0003723
Aed11g1306 535 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 48 136 IPR022023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1306 Aed-Chr11 17996799 18001573 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1306 K11093 - gmx:100800903 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1306 11 17996799 18001573 Aed11g1306 11 17996799 18001573 ECH