Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1296 ATGGTGCACAGCGCGTACGATTGTTTGCAGCTGGTGCGCGAGTGCCCTGCGAAGATCGAATCCATCGAATCCTACGGTTCGAAGCTTCTCGTGGGCTGCTCCGATGGATCGCTCCGAGTATTCGCGCCGGAGACGGAATCCTCCTCCGACGTGTCCAAGTCCTACGCGTTGGAGAAGAACCTCGCCGGGTTCGCGAAGAAGCCCGTGCTCTCATTGGCAGTGGTGGAATCGCGAGACTTCCTCATATCGCTCTCGGAATCCATCGCCTTCCACAAACTCCCTTCCTTCGAGACCATCGCGTTCATCACCAAGGCCAAGGGCGCCAACGTCTTCTGCTGGGACCACCGCCGAGGATTCCTCTGCTTCGCCAGGCAGAAGCGCGTTTGCATCTTCCGACACGACGATTTTGGTGTGGTGGATACGGTGAAGTCCATGTGTTGGTGCGGTGAGAATATATGTTTAGGGATTAGAAGAGAATATATGATTCTGAATGCTTCGAATGGAACTTTGTCTGAGGTTTTTACTTCTGGAAGACTAGCGCCTCCTCTGGTCGTTTCTCTTCCCTCTGGAGAACTTCTTCTTGGAAAGGAGAATATTTGGGTTTTTGTGGACCAAAATGGGAAGCTCCTTCCCAAAGGTAGGATTTGTTGGTCGGATGCTCCTTTGGAAGTTGTAATTCAAAAGCCGTATGCTATAGCTTTGTTGCCCAGATTTGTGGAGATTCGATCTCTCCGAGCTCCTTATCCACTTATACAGACAGTTGTTCTTCGAAATGTTCGCCATCTTTGCCCGAGCAATGATTCCATGATACTTGCTTTGGATAATTCTATTCATGGCCTCTTCCCTGTTCCCCTTGGAGCCCAGATAGTCCAATTAACAGCTTCTGGCAACTTTGAGGAGGCCTTATCATTGTGCAAGCTTCTTCCACCTGAAGATTCAAGTCTACGTGCTGCAAAGGAGGGTTCAATTCATATAAGATATGCTCACTATCTTTTTGACAATGGGAGCTATGAAGAGGCTATGGAACATTTTCTGGCATCTCAAGTAGAAATAACCTATGTGCTTTCCCTGTATCCATCCATTATCCTTCCAAAGACAACTATTGTTCATGAGCCTGAGAAGTTGGACATAGATGGGGATGCTTCACATCTCTCCAGAACTTCTTCAGGTGTGTCAGATGATATGGAACCCTCATCAACATCTCATATGTCAGAATCTGATGAGAATGCAGCACTTGAATCCAAAAAAATGAACCATAATATGCTTATGGCTCTCATAAAATATTTACAGAAGAAGAGATTTAGTTTTATTGAGAAGGCCACTGCAGAAGGAACTGAAGAAGTCGTTTTAGATGCAGTTGGGGATAACCTAACATCTTACAATCGGCTTAAGAAAACAAACAAGGGGCGTGGTAGTATACCTGTTAGTTCAGGAGCTCGGGAGATGGCTTCAGTATTGGATACTGCTCTACTCCAAGCTTTGCTTCTAACTGGACAGTCTTCAGTGGCTTTAGAATTACTGAGAGGTGTTAACTACTGTGATTTGAAAATATGTGAGGAAATACTTCGAAACGGTAACCATCATGTCGCTTTATTAGAACTTTACCAGCACAACTCATTGCACCGAGAGGCTCTTGAACTTCTTCACAAATTGGTGGATGAGTCGAAATCTAGCCAGTCTGAATTTACACAAAAATTCAAGCCTGAGGAAATCGTTGAGTATCTCAAGCCACTATGTGGGACAGACCCCATACTTGTTCTAGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCTCAAACTATAGACCTCTTTCTGTCCGGAAATATTCCAGCAGATATGGTGAGCTCATATTTGAAAAAGCATTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGAACGAGAATGCAGTGTCTGGCAATTTGCAGAATGAAATGGTGCACATCTATCTTTCTGAAGTACTCGATTGCCATGCTGATTTAAGTGCTCAACAAAAATGGGATGAGAAAGATTATTCCCCAACAAGGAAAAAATTATTGACTGCCTTAGAGAGTATAGCAGGATACAACCCAGAGGCTTTGCTAAAACGTCTTCCACCAGATGCTTTGTATGAAGAGCGCGCAATATTGTTGGGGAAAATGAACCAACATGAACTGGCATTATCATTATATGTTCATAAGCTTAATGCTCCAGAACTGGCATTGTCTTATTGTGATCGGGTCTATGAGTCTATGCATCAGTCATCTGCAAAATATTCCAGCAACATATACCTTGTGCTTCTGCAAATTTATTTGAATCCTCAAAGAACCACAGCAGGTTTCGAAAAGAGAATTACAAATTTATTATCCCCACAGAATAAAACCATTCCAAAACTTACTCATACACCATCCATAAAAAGTAGAGGCCGAGGGTCAAAGAAAATTGCTGCAATAGAGGGTGCGGAGGACACAAAAGTTAGTTTAAGCAGCACTGATAGTGGCAGGAGTGATGGTGATGCAGATGAATATAGTGAGGGTGGTTCTACTATCATGCTTGATGAGGTCCTTGATTTGTTGAGCCGCAGGTGGGATAGAATTAATGGAGCCCAGGCCCTTAAACTTTTACCAAAAGAGACGAAATTACAGGTGAAAGATGAACTCTATAGTCAGAGGAAAGCAGTTGTGAAGATAACCGGTGATAGCATGTGTTCTCTGTGCCATAAGAAAATAGGTACTAGTGTTTTTGCAGTCTACCCAAATGGTAGCACTCTAGTGCACTTTGTCTGTTTCAGAGATTCTCAAAATATGAAAGCAGTGGGCAAAGTGTCTCAATTGAGGAAGCGATTATGA 2841 0.4365 MVHSAYDCLQLVRECPAKIESIESYGSKLLVGCSDGSLRVFAPETESSSDVSKSYALEKNLAGFAKKPVLSLAVVESRDFLISLSESIAFHKLPSFETIAFITKAKGANVFCWDHRRGFLCFARQKRVCIFRHDDFGVVDTVKSMCWCGENICLGIRREYMILNASNGTLSEVFTSGRLAPPLVVSLPSGELLLGKENIWVFVDQNGKLLPKGRICWSDAPLEVVIQKPYAIALLPRFVEIRSLRAPYPLIQTVVLRNVRHLCPSNDSMILALDNSIHGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFDNGSYEEAMEHFLASQVEITYVLSLYPSIILPKTTIVHEPEKLDIDGDASHLSRTSSGVSDDMEPSSTSHMSESDENAALESKKMNHNMLMALIKYLQKKRFSFIEKATAEGTEEVVLDAVGDNLTSYNRLKKTNKGRGSIPVSSGAREMASVLDTALLQALLLTGQSSVALELLRGVNYCDLKICEEILRNGNHHVALLELYQHNSLHREALELLHKLVDESKSSQSEFTQKFKPEEIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIDLFLSGNIPADMVSSYLKKHSPNMQARYLELMLAMNENAVSGNLQNEMVHIYLSEVLDCHADLSAQQKWDEKDYSPTRKKLLTALESIAGYNPEALLKRLPPDALYEERAILLGKMNQHELALSLYVHKLNAPELALSYCDRVYESMHQSSAKYSSNIYLVLLQIYLNPQRTTAGFEKRITNLLSPQNKTIPKLTHTPSIKSRGRGSKKIAAIEGAEDTKVSLSSTDSGRSDGDADEYSEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPKETKLQVKDELYSQRKAVVKITGDSMCSLCHKKIGTSVFAVYPNGSTLVHFVCFRDSQNMKAVGKVSQLRKRL 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1296 946 PANTHER VACUOLAR SORTING PROTEIN 39 1 879 - -
Aed11g1296 946 SUPERFAMILY WD40 repeat-like 25 180 IPR036322 GO:0005515
Aed11g1296 946 Pfam Vacuolar sorting protein 39 domain 2 875 928 IPR019453 -
Aed11g1296 946 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 589 773 IPR000547 GO:0006886|GO:0016192
Aed11g1296 946 ProSiteProfiles Citron homology (CNH) domain profile. 16 269 IPR001180 -
Aed11g1296 946 PANTHER VACUOLAR SORTING PROTEIN 39 877 945 - -
Aed11g1296 946 PANTHER CNH DOMAIN CONTAINING 877 945 IPR032914 GO:0016192
Aed11g1296 946 PANTHER CNH DOMAIN CONTAINING 1 879 IPR032914 GO:0016192
Aed11g1296 946 Pfam CNH domain 26 263 IPR001180 -
Aed11g1296 946 MobiDBLite consensus disorder prediction 379 410 - -
Aed11g1296 946 MobiDBLite consensus disorder prediction 818 842 - -
Aed11g1296 946 Pfam Vacuolar sorting protein 39 domain 1 486 594 IPR019452 -
Aed11g1296 946 Pfam Region in Clathrin and VPS 615 744 IPR000547 GO:0006886|GO:0016192
Aed11g1296 946 MobiDBLite consensus disorder prediction 382 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1296 Aed-Chr11 17933353 17941734 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1296 K20183 - gmx:100805342 1725.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1296 11 17933353 17941734 Aed11g1296 11 17933353 17941734 ECH