Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1293 ATGGAGGCCAACGCTATTGCCATGGACTCAACGGAGTTAAAGGTCACGGAGCTTTTGAAGGAGGTCAACGTTGACTACTCAGTTCGGTTCTCTAAGCTCGTCAACGACACCGTTTCCGCCATTAAAGCCTCCATCGAAAAAATCCCCAACGATTTCAAGGTAACTTCAGATTTAGCACCGCGCTTTGTTACGGACATTGGTGCCGATAAGGTCGAGTTCAAGTTTAAGCAGCCAGCGTCTATTAAGAACGGTGGAAGTTACTCCATACAGAGTCTTGCGAAGCCTGAAGTTAATGTCGATCTTATTATCGGATTACCAAAGGAGTGCTTCCATGAGAAGGATTATTTGAATTACAGATACCATGCCAAGAGGTGTCTCTATCTCCGTTTGATGAAAAAGTATTTGGAGAAGTCTTCATCTATTGACAGGGTTGAATGGTCCACTCTGCAGAATGAAGCCAGAAAACCCTTGCTCGTTGTGTATCCAGCTGCTAAGCTTGTTGAAGTTCCTGGATTTTGTGTAAGAATTATTCCGTCAGCTAAGGCTATATTTAGCATAGCGAAGTTGAACATGAAGCGCAACAACATTCATAATTTAAGGACTGCTCTTCAGGCTACACCGAAGTACAATTCTAGTATCCTGGAAGACATGTTTATAGAAGATGCAGAATTTATCAACAACTATTTTGTTGGATGGAAGGAACTAAGAGAGGCTTTAATCCTGCTTAAGGTTTGGGCTCGACAAAGAAGTTCGATATATGTTCATGATTGCCTGAATGGGTTTTTGATTTCTGTCATTTTGGCATATCTTGCTTCTATGCAACATATCAGCAATTCAATGAAAGCAACTGAAATATTTCGCATTATGTTGAACTTCATTGGTATGTGTGTATTTATCAATGCTATTGGTTATGCAGCCACCTCAAAGTTGTGGAGCCGAGGGCTCTACTTTCCAAAGGAAGGCCAGAGCAACATTACGAAAGAGCAAAAGATGCAACTTAAAGAGTCATTTCCAGTTGTCATATGTCATCCATCTGGAGGATTCAATTTGGCTTTTCGAATGTCTAAGATTGGTTTTACTCGGCTTCAAAATGAGGCTACTTTGACACTTAGGTGCATGGAAAAGTGTAGAGATGGTGGATTTGAGGAAGTTTTTATGACCAAGATTGACTGTGCTGTTAAATATGATTATTGCATTAGAATAAATTTGAAGGGAAAGAAGGAGGTGTTTGCATCGGGGTTTTGTTTGGACGATGAGTGCTGGAGATCATATGAGGATAAAATTCATGGTATTTTATCTAAAGGGTTGAACGATAGAGCAAAATTCATTCAAGTTACATGGAGAAATACACAATGCCAGTGGAGTGTGGATGATGGCTTGGCGGTACTTGATAAAGAGCCATTGTTCATAGGAATTTCAGTGAGTACTTTGGAGAAAGCATTTAGGATGGTTGATATTGGCCCAAATGTGGAAAGTAAAGAGGAGCAGGCTCTTGAATTTCGAAAGTTTTGGGGTGAAAAAGCAGATCTTAGAAGATTTAAAGATGGTAGAATTGCAGAAAGTACAGTATGGGAATGTGAGCAATGGGCAAGGCATCTTGTTTTAAAAAGAATAGCTGAGCATGTACTTAGTCGGCATCTTTCTCTATCCAAGGAAAATATTGTAGTTATTGTGGATCAACTTGATTTCTCTTTGCTTCATGGCTCTGGAGATCCTATTTCATACTCTGGAAGTTTGCTTGGGGCATTTGATGTTTTATCAAAGCGTTTGCGTTTTATTGAAGACCTCCCTTTGAAGGTGTCCAGTGTACAGCCTTTAGACTCTGCTTTCAGGTTTACATCAGTCTTCCCTCCTGAACCTCATCTTTTAGCTAATGAAAAAATTGAATCTCTCAGACTGAATAAGTTTGTTCCATCATGCATTCAACCACTGGAAGTTATGATTCAGCTGGAGGGTTCTGGAAACTGGCCAATGGATGAAATCGCAATTGAAAAAACAAAATCTAGTTTCCTTATTCAAATTGGAGTGAGTCTTCGAAAGACATGGGGGATGACATGTACTGCCACTGAGGATAATGTGGATGTGCTAATGTCTGGATATGCATTTCGTCTAAAAATTTTGCATGAGAGGGGCCTTAGTTTGCTTCAAAAGGAAACTGAGAATGATCAAGCTAAGCGGGTTCCTTCTGTCGACAAGAAACTTTTTATCCATAGTCAGCATGCTAACTTGATCAATGGATTACAAAGTTGTTATCCAACATTTGGACCAGTAGTTAGACTTGCAAAACGATGGGCTGCTTCACATCTATTTTCAGCTTGCTTGGTAGAGGAGGCTGTTGAGCTATTGGTTGCATATCTTTTTCTTGATCCTTTGCCATATGATGTTCCCTGTTCACGGATCACTGGGTTTTTGAGGTTCCTGCGATTACTCTCACACTATGATTGGACTTTCTCTCCGCTGGTTGTTGACATAAATAATGACTTGAGCCCAAGTGATGAGAAAGAAATATATGACAACTTTTTGTTAAGAAGGAAAGGTCAGGGAGAGAATGGACAGAGTGTAGGACCAGCAATGTTCTTAGCTACATTTTATGATAAAGAGTCCGAGGCTTGGACTGGATTATCACCCAGTGGAATGGAACTTAAAAGGTTAGTTGCATATGCCCAAAGCAGTGCCAATTTGCTGGCAAAACTCACATTTCAGGAAGAGATTAGTCCATATAGATGGGAGTGCCTTTTTAGAACTCCTTTAAACAATTATGATGCAGTAATTATTCTCCACAAGGACAAACTCCCGTATCCTCAAAGGCTTCTCTTCCCATCAGAAGTTAATCATGGAACACATGTTGCAGAAGGACACGCCAGCAAGTGCTTCCAACCCTTTTTGTTGCATAAGGATTTGAAGGGCAGGCCAGAGGAACTTAAAAATAAGTTGCTGGAAGAGTTCTCAACTACATTCCAAGTATGGCATGATTATCTAGGAGGTGATGTTATTGGCCTAACATGGGGGGAATCAAATCCTTCCAAGAAGCGGAAGCAGGGGGAAGTAGTAGAGGAAGAAAATAATCCTTGCAAGGTGTTAAAAGCAGTGGGAGAAGTTGGGAAAGGTCGAGTGGAAGAGTTCGGGAGCCAAATGGGTCTTCTGAGCATCATCAGGAAAATCAAGCGAAAAGAGAAGGAAATGCGAATTCTGATGGTCGGATTGGACAATTCTGGGAAAACCACAATCGTTTTAAAGATTAACGGAGAGGACACTAGCGTTATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAGCTTACCAAAAGTACACCCTAAATATTTGGGATGTTGGGGGCCAGAAAACTATAAGATCTTACTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTTGTTGACAGTTCAGATCTGAGAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGAGGCTATCCGGAGCATCCTTACTGATACTAGCAAATAAACAGGACATAAAAGGTGCCCTTACACCTGAAGAAATAGCTAAGGTGCTGAACTTGGAAGCCATGGATAAATCTCGGCATTGGCAGATAGTTGGCTGTAGCGCATACACTGGTGAGGGTCTGCTTGAGGGATTTGATTGGTTGGTGCAGGACATAGCCTCTAGAATCTACATGCTTGACTGA 3690 0.4114 MEANAIAMDSTELKVTELLKEVNVDYSVRFSKLVNDTVSAIKASIEKIPNDFKVTSDLAPRFVTDIGADKVEFKFKQPASIKNGGSYSIQSLAKPEVNVDLIIGLPKECFHEKDYLNYRYHAKRCLYLRLMKKYLEKSSSIDRVEWSTLQNEARKPLLVVYPAAKLVEVPGFCVRIIPSAKAIFSIAKLNMKRNNIHNLRTALQATPKYNSSILEDMFIEDAEFINNYFVGWKELREALILLKVWARQRSSIYVHDCLNGFLISVILAYLASMQHISNSMKATEIFRIMLNFIGMCVFINAIGYAATSKLWSRGLYFPKEGQSNITKEQKMQLKESFPVVICHPSGGFNLAFRMSKIGFTRLQNEATLTLRCMEKCRDGGFEEVFMTKIDCAVKYDYCIRINLKGKKEVFASGFCLDDECWRSYEDKIHGILSKGLNDRAKFIQVTWRNTQCQWSVDDGLAVLDKEPLFIGISVSTLEKAFRMVDIGPNVESKEEQALEFRKFWGEKADLRRFKDGRIAESTVWECEQWARHLVLKRIAEHVLSRHLSLSKENIVVIVDQLDFSLLHGSGDPISYSGSLLGAFDVLSKRLRFIEDLPLKVSSVQPLDSAFRFTSVFPPEPHLLANEKIESLRLNKFVPSCIQPLEVMIQLEGSGNWPMDEIAIEKTKSSFLIQIGVSLRKTWGMTCTATEDNVDVLMSGYAFRLKILHERGLSLLQKETENDQAKRVPSVDKKLFIHSQHANLINGLQSCYPTFGPVVRLAKRWAASHLFSACLVEEAVELLVAYLFLDPLPYDVPCSRITGFLRFLRLLSHYDWTFSPLVVDINNDLSPSDEKEIYDNFLLRRKGQGENGQSVGPAMFLATFYDKESEAWTGLSPSGMELKRLVAYAQSSANLLAKLTFQEEISPYRWECLFRTPLNNYDAVIILHKDKLPYPQRLLFPSEVNHGTHVAEGHASKCFQPFLLHKDLKGRPEELKNKLLEEFSTTFQVWHDYLGGDVIGLTWGESNPSKKRKQGEVVEEENNPCKVLKAVGEVGKGRVEEFGSQMGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIAYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKFELDNLLKEERLSGASLLILANKQDIKGALTPEEIAKVLNLEAMDKSRHWQIVGCSAYTGEGLLEGFDWLVQDIASRIYMLD 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1293 1229 TIGRFAM small_GTP: small GTP-binding protein domain 1059 1194 IPR005225 GO:0005525
Aed11g1293 1229 Pfam Nrap protein domain 6 917 1040 IPR035371 -
Aed11g1293 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1057 1223 IPR027417 -
Aed11g1293 1229 SMART sar_sub_1 1041 1221 IPR006689 GO:0003924|GO:0005525
Aed11g1293 1229 Pfam Nrap protein PAP/OAS-like domain 235 388 IPR035367 -
Aed11g1293 1229 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 5 1041 IPR005554 -
Aed11g1293 1229 Pfam ADP-ribosylation factor family 1048 1221 IPR006689 GO:0003924|GO:0005525
Aed11g1293 1229 Pfam Nrap protein domain 3 393 548 IPR035368 -
Aed11g1293 1229 Gene3D - 1048 1226 IPR027417 -
Aed11g1293 1229 Pfam Nrap protein nucleotidyltransferase domain 4 575 748 IPR035369 -
Aed11g1293 1229 CDD Arl2 1047 1220 IPR045873 GO:0003924
Aed11g1293 1229 Gene3D - 223 391 - -
Aed11g1293 1229 SMART arf_sub_2 1045 1225 - -
Aed11g1293 1229 Pfam Nrap protein domain 1 99 221 IPR035082 -
Aed11g1293 1229 Pfam Nrap protein PAP/OAS1-like domain 5 751 906 IPR035370 -
Aed11g1293 1229 SMART rab_sub_5 1061 1224 - -
Aed11g1293 1229 PRINTS GTP-binding SAR1 protein signature 1117 1142 IPR006689 GO:0003924|GO:0005525
Aed11g1293 1229 PRINTS GTP-binding SAR1 protein signature 1090 1114 IPR006689 GO:0003924|GO:0005525
Aed11g1293 1229 PRINTS GTP-binding SAR1 protein signature 1062 1085 IPR006689 GO:0003924|GO:0005525
Aed11g1293 1229 PRINTS GTP-binding SAR1 protein signature 1195 1219 IPR006689 GO:0003924|GO:0005525
Aed11g1293 1229 ProSiteProfiles small GTPase Arf family profile. 1054 1221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1293 Aed-Chr11 17915526 17927443 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1293 K14544 - gmx:100776157 1852.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1293 11 17915526 17927443 Aed11g1293 11 17915526 17927443 ECH