Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1289 ATGGCTGCTTCAAAGTTAGCCTCATGCGTGGCGGTAACATCCGCTGCGGTGGTTTCCATGTCCACCTTCTCCGATCGTGCCTACGCCGACTCTTACTTTCGACTCCCTTTCTTCACTTCTAAACCTTCCAATGAGCCTTCGCCACCGAACCAGACCTCCGACTCCAAGTCGTACCCTCCGCCGCCCGATGAACCTAACAAATCGGGTTTCGACCCGGAATCGTTAGAAAGAGGAGCCAAAGCTCTCCGCCAAATCAATAGTTCTCCCTACTCCAAGCAGTTGTTTGATTTAATGCGGAAACAGGAGGAAACTCGTCTCTCTGAATTAGATGCTGAGAAAGTTCATTACGAACTTATTCAATCTCAAGGAGATATCGAAAGGCAGCGGAAAATGGCTGAAGAACAACGCAATCTAATACAAGAGCAAGCCCAGAGACAGGCCCAGGTGTTGCGATTTGAAGATGAATTGGCAAGGAAAAGAATGCAGACAGATCATGAAGCCCAAAGGCAACATAATGTCGAGTTGGTCAAGATGCAAGAGCTGTCTTCTGTAAGAAAGGAGCAGGCAAGACAGGCTACTGAAGAACAGATTCAATCTCAGCAGCGTCAGACTGAGAGAGAGAGAGCTGAGTTAGAAAGAGAAACTATTAGAGTTAAGGCAATGGCAGAGGCCGAAGGCCGAGCTCATGAAAAAAAATTGACAGAGGATCATAACAGGAGAATGCTTATAGAACGAATGCAAGGTGAAAGAGATAAATGGCTTGCTGCAATTAACACAACTTTTAGTCACATTGAAGCTGACTTCTTACAATATGCAGGTGGTCTAAGGGCCTTATTGACTGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCTACAGCACTAGCTGCAGGAGTGTATACGACTAGAGAAGGTGCTAAAGTCACTTGGGGCTATATTAATCGCATTCTGGGGCAGCCATCACTGATCCGGGAATCATCCATGGCAAAATTTCCAGGGTCAAAGATCATTTCTCAAGCCAAAAATAAAATTCTAAATAATAGTACTTTGGCTGGGGCAAAGCCTATTGGGAGTAAAAATGGACTTGGAAATGTAATCCTCCATCCATCATTGCAGAGAAGAATAGAGCATCTTGCGCGTGCAACGTCAAATACCAAAGCCCATCAGGCACCATTTCGTAACATGCTTTTTTATGGGCCTCCTGGCACTGGTAAAACAATGGTTGCAAGGGAAATAGCTAGAAGATCGAATTTGTTTAGAAAGGTATCTTTAACTACTGCTGACTCTTACAATTTTGATGTGAAGGGTTTGGATTATGCCATGATGACTGGAGGAGACGTTGCACCTCTGGGCGCACAGGCTGTTACCAAAATTCATGATATATTTGATTGGGCCAAGAAATCAAGAAAAGGCCTATTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCTCACACATGAGTGAAGCTCAACGAAGTGCTCTAAATGCATTGCTATTCAGAACTGGTGATCAGTCTAGAGACATAGTACTTGTCCTTGCTACGAACAGACCAGGGGATCTTGACAGTGCAGTTACTGATCGTATTGATGAAGTGATTGAATTCCCGCTTCCGGGAGAGGAGGAACGTCTGAAGTTATTGAAGCTCTATTTAAACAAGTATCTATGTGATGATAATGGCTCCAAGGGGGGCTTCACCCTGAAGAAGCAGCCCCAGAAGATAACCATAAAAGATTTATCCGAAGATGTTTTCAGAGAGGCTGCCAAGAAAACAGAGGGATTTTCTGGGCGTGAGATCGCCAAACTCATGGCCAGCGTCCAAGCCGCTGTCTATGGGCGCCCAGACTGCATTTTGGATTCCCAGTTGTTTAAAGAAATTGTAGATTACAAGGTGGTGGAACATCATCAACGCTTAAAACTAGCAGCTGAAGGTGGCCAACCTGGCCAAGTATAA 1965 0.4489 MAASKLASCVAVTSAAVVSMSTFSDRAYADSYFRLPFFTSKPSNEPSPPNQTSDSKSYPPPPDEPNKSGFDPESLERGAKALRQINSSPYSKQLFDLMRKQEETRLSELDAEKVHYELIQSQGDIERQRKMAEEQRNLIQEQAQRQAQVLRFEDELARKRMQTDHEAQRQHNVELVKMQELSSVRKEQARQATEEQIQSQQRQTERERAELERETIRVKAMAEAEGRAHEKKLTEDHNRRMLIERMQGERDKWLAAINTTFSHIEADFLQYAGGLRALLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSKIISQAKNKILNNSTLAGAKPIGSKNGLGNVILHPSLQRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARRSNLFRKVSLTTADSYNFDVKGLDYAMMTGGDVAPLGAQAVTKIHDIFDWAKKSRKGLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCDDNGSKGGFTLKKQPQKITIKDLSEDVFREAAKKTEGFSGREIAKLMASVQAAVYGRPDCILDSQLFKEIVDYKVVEHHQRLKLAAEGGQPGQV 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1289 654 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 650 - -
Aed11g1289 654 MobiDBLite consensus disorder prediction 53 67 - -
Aed11g1289 654 Pfam ATPase family AAA domain-containing protein 3, N-terminal 63 324 IPR021911 -
Aed11g1289 654 MobiDBLite consensus disorder prediction 184 211 - -
Aed11g1289 654 Gene3D - 338 559 IPR027417 -
Aed11g1289 654 MobiDBLite consensus disorder prediction 39 73 - -
Aed11g1289 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 636 IPR027417 -
Aed11g1289 654 CDD AAA 387 541 - -
Aed11g1289 654 Coils Coil 183 217 - -
Aed11g1289 654 SMART AAA_5 391 543 IPR003593 -
Aed11g1289 654 Pfam ATPase family associated with various cellular activities (AAA) 395 541 IPR003959 GO:0005524|GO:0016887
Aed11g1289 654 ProSitePatterns AAA-protein family signature. 513 532 IPR003960 GO:0005524|GO:0016887
Aed11g1289 654 Coils Coil 125 145 - -
Aed11g1289 654 PANTHER PUTATIVE ATP-ASE 1 650 IPR039188 GO:0005739|GO:0007005
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1289 Aed-Chr11 17890039 17895547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1289 371 616 Miscellaneous Gene Families AT5G53170 28.458 4.88e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1289 K17681 - gmx:100777755 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1289 11 17890039 17895547 Aed11g1289 11 17890039 17895547 ECH