Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1260 ATGATGAGAACTTCAATAGGGAATCTTTCTTCCTCCTTCACAAGCTTTCGTTCCGCCTCATCATGGTTCGAGGTGTACGCTGCTTTCTCCACATTCATGATGCTTCTCAGAACCGCAATCAACGATCTGATACCCCACCAAGTCCGTACTTTCATAGTCTCCAAGCTTAAGTCTCTCTTCTCCGACCGCCAGAACATGAACCAGGTCTCACTTCAGATCAACGAGATTTGGGATGGCCAAATCAATCAGGTCTTCCAAGCAGCGCAAGAGTATCTCCCAGCCAGAATATCCCACTCTTACAAGTCCCTCAAAGTTGGGAAGCTTCCAAAGCACAAGAACATTGCAGTGGCCGTCGATGGAACACAAGAGGTCGTGGATCTTTTTCAAGACATCAAGCTCAGCTGGAAGCTTGTTGAGAAAACCCCCAAAAGCGACTCCGAGCACCACCCTAAGTCAGTTGGCGGTTACGAGAGGAAGTCTTTTACTCTAAGCTTCGATGAGAAGCATAGAGATGTTGTTATGAACAAGTACATTAACCACGTTATAAGCACTTACCAGGACATGCAGACAGAGCAGAAAACCATCAAGATCCATTCCCTTGGCGGCAGGTGTTGGCAGAAAAGTGACTTGACTCATCCGGCGTCGTTTGACTCGCTTGCATTGGAGCCTCAGCAGAAACATGCCATTATCGATGACTTGAATCTGTTTTTGCGGAGGAAGGAGCTTTACAAGAAGGTGGGGAAGCCTTGGAAACGTGGCTACCTCTTGTATGGGCCTCCCGGTACAGGAAAATCTAGCCTTATTGCTGCCATGGCCAATTACTTGAAGTTTGATGTCTATGATTTGGAGCTAACCTCTGTGTTTTCTAACTCCGACCTCATGCGAGCCTTGAGGGAAACAACCAACCGTTCCATCATCGTCATCGAAGACATAGACTGCAACAAAGAGGTCCATGCCAGACCAACATCAAAACCTTTTTCAGATTCAGATTCAGATTCTGGCTTTAACCGCAAGCATGTCAAGGTTAAGACAAACAGGTTTACTCTGTCGGGTCTGCTTAACAACATGGATGGTTTGTGGTCAAGTGGTGGAGAGGAGCGAATTATAATATTCACTACTAACCACAGAGAAAAAATAGACCCTGCGTTGCTGCGCCCTGGTCGTATGGACATGCACATTCACTTGTCCTTTCTCAAAGCCAAGGCCTTTCGAGTGTTGGCTTCTAATTATTTGGGCATTGAAGGAGATCATCCACTCTTTAAACAAATTGATGGACTATTGGAGAAATTGCAAGTCACCCCTGCTGTAGTAGCAGAGCAACTCATAAGAATTGAGGATCCTGATCGTGCTTTGGAAGGACTCGTTGAATTTCTCAAAGAAAAGGACAAGGAAAGCCTACTTATAGATTTGTGA 1413 0.4572 MMRTSIGNLSSSFTSFRSASSWFEVYAAFSTFMMLLRTAINDLIPHQVRTFIVSKLKSLFSDRQNMNQVSLQINEIWDGQINQVFQAAQEYLPARISHSYKSLKVGKLPKHKNIAVAVDGTQEVVDLFQDIKLSWKLVEKTPKSDSEHHPKSVGGYERKSFTLSFDEKHRDVVMNKYINHVISTYQDMQTEQKTIKIHSLGGRCWQKSDLTHPASFDSLALEPQQKHAIIDDLNLFLRRKELYKKVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELTSVFSNSDLMRALRETTNRSIIVIEDIDCNKEVHARPTSKPFSDSDSDSGFNRKHVKVKTNRFTLSGLLNNMDGLWSSGGEERIIIFTTNHREKIDPALLRPGRMDMHIHLSFLKAKAFRVLASNYLGIEGDHPLFKQIDGLLEKLQVTPAVVAEQLIRIEDPDRALEGLVEFLKEKDKESLLIDL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1260 470 ProSitePatterns AAA-protein family signature. 367 385 IPR003960 GO:0005524|GO:0016887
Aed11g1260 470 SMART AAA_5 250 399 IPR003593 -
Aed11g1260 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 446 IPR027417 -
Aed11g1260 470 Gene3D - 206 393 IPR027417 -
Aed11g1260 470 PANTHER BCS1 AAA-TYPE ATPASE 15 466 - -
Aed11g1260 470 Pfam Domain associated at C-terminal with AAA 44 138 IPR025753 -
Aed11g1260 470 Gene3D - 394 465 - -
Aed11g1260 470 CDD AAA 239 396 - -
Aed11g1260 470 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 15 466 - -
Aed11g1260 470 Pfam ATPase family associated with various cellular activities (AAA) 255 395 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1260 Aed-Chr11 17735318 17737783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1260 243 396 Miscellaneous Gene Families AT3G02450 33.129 8.19e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1260 - K08900 gmx:100787726 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1260 11 17735318 17737783 Aed11g1260 11 17735318 17737783 ECH