Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1259 ATGGGATTCTACACACAGAACCTCTTTTCCTCTTTCACCTCAGCATCATCATGGTTCGAGGTGTATGCTGCCTTCTCCACATTCATGATGCTCCTCAGAGCAGCATTCAATGATCTCATTCCCCATCAATTCCAATCCTTCATCGCCTCAAAGCTAGAGTCTTTCTTCTCCAGATACCAGGCAAATAACAACATCATCTCTCTCAAAATTAACCATCTTTGGGACGAAAATTCGGGAAACCGCAATGAACTTTTCGATGCTGCCCAGGAGTACCTCCCCACCAGGATTTCTCACTCCTACAAATCCCTCAAAGTTGGCAAACTGGAAGACCAGAAACACATTGAGCTCGCAGTTGATGGAAGTGAAGAGGTGGTGGACAAATTCGAAGGCACCAAGTTCACTTGGAAGCTGGAGGAGGATTCCAAAGAGGATTCCAACTATCACAAGAAGTATAGCTTTGTACTAACCTTCAATGAGAAGCATAGAGAGAGAGCATTGGATCGGTATATACCGCACGTGCTTAAAACTTATGAGGCCATGAAAGCTGAGAGGAGGATTGTGAAAATCTATTCCAGGTTAGAAAGCTATTGGAGCGAAGCTGAGTTATCGCATCCAGCCACATTCGACACATTGGCCTTGGATCCCGAGTTGAAGCAAGCTATCATTCATGATTTGGAGCGGTTCCAGGGGAGGAAGGAACTTTACAAGAAAGTGGGCAAGCCTTGGAAACGTGGCTACTTGTTGTATGGACCCCCTGGAACTGGAAAATCTAGCCTCATTGCAGCTATGGCAAACTACTTGAAATTTGATGTGTATGATTTGGAGCTCTCTTCAATTCATTCTGACTCAGACCTCATGGAATCCATGAGGGGTGTATCTAACCGTTCCATCGTTGTCATTGAAGATATAGACTGCAACAAAGAGGTGCATGCAAGATCAAACGAGGCCGGTACTGACAATCAGGTTACATCTGGGAAGTTGAGTCTTTCGAGTCTGCTTAACAATATGGATGGTTTGAGATCAAGTGGCGGAGAGGAGCGGATTATAATATTCACAACTAACCACAAAGACAAAATAGAACCTGCGTTGTTGCGTCCTGGTCGTATGGACATGCACCTTCACTTGTCCTTCCTCAAAGCCAAAGCCTTTCGAGTCTTGGCTTCTAATTATTTGGGCATTGAAGGAAACCATCCACTCATTCAAGAAATTGAAGGCTTATTGGAGAAGACAGAAGTCACCCCTGCAGTAGTAGCAGAGCAACTGATAAGATATGAGGATCCTGATGCTGCTTTGGAAGCACTTGTTACATTTCTTAAAGAAATGGACAAGGATAGTATTTGTGACTTAGAGTCAACAGGGTTGTTTTTAGAGACCAATATGAGTGGAATGGAACAACCTTGCATTTCGCCAAAACCAGAGCTGTGTTTGTTATTTGCTAATTCTAAATTAGCATGCAGAGAGGTTCACGGTCTTGATCAGACTTGGCAGGGCATTTGGGAGTTTCCTTTCTTGCCCTGTTCTTTCAAGCAGAAAGCCTCAAACATGTTGAGGAATTCTTTGTCCAGAAAGGGTAGGCGAAGCAGCAAGGTCATGTCCATTGAAATTGAGGATGTCCACGATGCTGAGGAGTTGAAAATCGTTGATGAGTTCCGTCAAGCTCTTATTTTGGATGAACTACTCCCTGCAAAACACGATGATTATCATATTATGCTTAGATTCCTGAAGGCCAGGAAATTTGATATTGAGAAAACAAAGCAAATGTGGGCTGATATGATCAAATGGAGGAAGGAGTTTGGTGCCGACACTATTACAGAGGACTTTGAATTCAAAGAAATTGACGATGTCTTACAATATTATCCCCAAGGACATCATGGAGTGGACAAAGATGGAAGACCAGTGTACATTGAGAGATTAGGCCAAGTCGATGCCACGAAAATGATGCAAGTCACAACCATGGATCGCTATATCCAATACCACGTAAAGGAGTTTGAGAGGACATTCGATGTCAAGTTTGCAGCTTGTTCAATTGCTGCAAAGAAGCACATCGATCAAAGTACAACTATCCTGGATGTGCAGGGAGTGGGGCTTAAAAACTTCAACAAACATGCTAGGGAACTTGTTACTCGCCTTCAGAAGATTGATGGTGACAACTACCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATACTGTGGAACACCGTAAAATCATTCCTTGATCCTAAGACCACTGCAAAAATCAATGTTCTTGGCAACAAGTATGACACCAAATTGCTAGAAATAATTGATGCAAGTGAGTTGCCTGACTTTTTGGGAGGTACTTGTACATGTGCCGAACACGGAGGCTGTATGCGCTCTGATAAGGGCCCGTGGAAGGATGCAGAAGTCATGAGGATGGTTCAGAATGGTGAACACAAATGTTCAAAAAAATGTGCATCAAAACTCGCGGAAGAGAAAGAGAAAGAAAAGGAAAAAGAAAAAGAAATTTCTGAGGAACAGAAGACTTCCAAATTGGAGGAAAATGTCACCCCCCAGCTTGCTCCAGTTATTGAAGAAGAGGTCCCTGCTGCTACTGAAGCTCCCAAGCCTCAGGACTTAGCCCCAACCCCAACCCCAACGGATGATAAAACTGCTATGAAGAAAGATGATGAGAAAGCTTCCAAGCCTAAGGACTTGTCCCCTAAGGCGGATAAAACTGCTGTGAAAAAATTGGAGGAGAAAATGGTGACCATCAATAATCAGCCAACTACCATGCCACCTGATAAAGAGGAAATGCTGAACTCAACTATAACCCGAGCTGATGACTTGGAGAAACAACTTTTGGCCACCAAGAAGGCTCTGGAAGATTCACTTGTTAAGCAAGAAGAGCTTTCTGCTTATCTTGAGAAGAAGAAGAAGAAGAAGAAGAGATTCGTAATACTTCTTTTGAAGAGCAAATCTTTGGATGCCCAAACAAGAGGTCCAGACATTAACTGGGGATTAGCTTTTAGTTTCTGCCTTACAGACAAGAGACTTCCCAAATGCCCACTTACATAA 3054 0.4319 MGFYTQNLFSSFTSASSWFEVYAAFSTFMMLLRAAFNDLIPHQFQSFIASKLESFFSRYQANNNIISLKINHLWDENSGNRNELFDAAQEYLPTRISHSYKSLKVGKLEDQKHIELAVDGSEEVVDKFEGTKFTWKLEEDSKEDSNYHKKYSFVLTFNEKHRERALDRYIPHVLKTYEAMKAERRIVKIYSRLESYWSEAELSHPATFDTLALDPELKQAIIHDLERFQGRKELYKKVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSSIHSDSDLMESMRGVSNRSIVVIEDIDCNKEVHARSNEAGTDNQVTSGKLSLSSLLNNMDGLRSSGGEERIIIFTTNHKDKIEPALLRPGRMDMHLHLSFLKAKAFRVLASNYLGIEGNHPLIQEIEGLLEKTEVTPAVVAEQLIRYEDPDAALEALVTFLKEMDKDSICDLESTGLFLETNMSGMEQPCISPKPELCLLFANSKLACREVHGLDQTWQGIWEFPFLPCSFKQKASNMLRNSLSRKGRRSSKVMSIEIEDVHDAEELKIVDEFRQALILDELLPAKHDDYHIMLRFLKARKFDIEKTKQMWADMIKWRKEFGADTITEDFEFKEIDDVLQYYPQGHHGVDKDGRPVYIERLGQVDATKMMQVTTMDRYIQYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKHARELVTRLQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKYDTKLLEIIDASELPDFLGGTCTCAEHGGCMRSDKGPWKDAEVMRMVQNGEHKCSKKCASKLAEEKEKEKEKEKEISEEQKTSKLEENVTPQLAPVIEEEVPAATEAPKPQDLAPTPTPTDDKTAMKKDDEKASKPKDLSPKADKTAVKKLEEKMVTINNQPTTMPPDKEEMLNSTITRADDLEKQLLATKKALEDSLVKQEELSAYLEKKKKKKKRFVILLLKSKSLDAQTRGPDINWGLAFSFCLTDKRLPKCPLT 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1259 1017 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 611 785 IPR001251 -
Aed11g1259 1017 Gene3D - 599 811 IPR036865 -
Aed11g1259 1017 SUPERFAMILY CRAL/TRIO domain 611 807 IPR036865 -
Aed11g1259 1017 MobiDBLite consensus disorder prediction 823 844 - -
Aed11g1259 1017 Pfam ATPase family associated with various cellular activities (AAA) 247 375 IPR003959 GO:0005524|GO:0016887
Aed11g1259 1017 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 906 976 - -
Aed11g1259 1017 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 507 865 - -
Aed11g1259 1017 Coils Coil 815 842 - -
Aed11g1259 1017 Pfam Domain associated at C-terminal with AAA 40 137 IPR025753 -
Aed11g1259 1017 SMART AAA_5 242 379 IPR003593 -
Aed11g1259 1017 CDD AAA 231 376 - -
Aed11g1259 1017 Pfam CRAL/TRIO, N-terminal domain 563 590 IPR011074 -
Aed11g1259 1017 SMART sec14_4 611 782 IPR001251 -
Aed11g1259 1017 CDD SEC14 612 780 IPR001251 -
Aed11g1259 1017 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 906 976 - -
Aed11g1259 1017 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 507 865 - -
Aed11g1259 1017 MobiDBLite consensus disorder prediction 881 904 - -
Aed11g1259 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 426 IPR027417 -
Aed11g1259 1017 SUPERFAMILY CRAL/TRIO N-terminal domain 539 607 IPR036273 -
Aed11g1259 1017 SMART CRAL_TRIO_N_2 566 591 IPR011074 -
Aed11g1259 1017 Gene3D - 198 373 IPR027417 -
Aed11g1259 1017 MobiDBLite consensus disorder prediction 823 904 - -
Aed11g1259 1017 Gene3D - 374 441 - -
Aed11g1259 1017 Pfam CRAL/TRIO domain 617 779 IPR001251 -
Aed11g1259 1017 Gene3D - 511 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1259 Aed-Chr11 17725842 17733582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1259 572 776 Acyl Lipid Metabolism Gene Families AT5G47730 29.717 4.70e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1259 - - gmx:100796901 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1259 11 17725842 17733582 Aed11g1259 11 17725842 17733582 ECH