Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1242 ATGGGATCTCTCTGTTTCCCTCTATTTGCGATCATGATCATCGCAATTTGTGGGCTATTATTAATATTGGGCGCAGAATCAAAGACTCATTGGGGAGATGCAGAGGTTCTCAAGCAGCTCAAGCAAGGTCTGGACCCAGCTTCGGTTAACCCAGGCTCCTGCGTCAGTTCCTGGGACTTCACAGTTGATCCGTGCGACAACCTTTTCGGCCACAAATTCACGTGCGGCTTCAGATGCGACGTCATCGTTTCGGGCCTCAGCCGAGTCACGGAACTCGCGCTAGACCAAGCCGGTTACGCCGGTTCCCTCACCCTCCTCACCTGGAACCTTCCTTATCTACAAACACTTGATCTCTCCAACAACTACTTCTCCGGCCAAATTCCCGATTCCTTATCGAACCTCACTCGTCTCACCCGACTCACTCTCTCCTCGAACTCGTTCTCCGGCCAAATACCCTCTTCCATCGCCACACTCTCCAACCTCCAAGAGCTTTACCTCGACAACAACAACCTACGAGGAACAATCCCAGGAACCTTCAGCAACCTGGCCAACCTTAAAAGACTCGAACTCCAATCTAACAAACTCAACACCCGCCTTCCAAACTTGGGTTCCCTTAAAAACCTTAAATTCCTCTACCTTAGCGACAACTTCGTCACCGGAACGTTTCCGGCGTCGCTCCCTGTTTCCTTGGTTCAGATTTCAATTAGGAACAACAATTTAAGCGGTGTCTTAATTGGCGAAAGTTTCAAGAATTTGAAGAGGCTGCAGGTGGTGGATTTCAGTTCCAACCAGTTGAGTGGCTCTGTTCCCTCTGTTTTCTTCGAGCTTCCGTCGCTGCAGCAGTTGACACTGTCCTTCAACGAATTCACGAAGCTCGAAGCGCCTTATAAGGGAGTGGAATCGCAGAGCGGGCTTATAGCGGTTGATCTGAGCAACAACAAGCTTCAGGGGTATTTGCCGTCGTTCATGGCGGTGATGCCGAAGCTTTCGTCGTTGTCGTTGGAGAACAACGAGTTAACGGGGCGTATACCGACCCAGTTCGGGGTGAAAACGGTGTTTCCCGAAAAGGGGGTGTCTTCGTTCGGGAGGCTTCTGTTGGGTGGGAATTACTTGTTGGGAGGGATACCTCGACCCTTGTTAGCGCTGAAACGCGATTCTGCGAACGTGAGTTTGGTTGATAACTGCTTATACAGGTGCCCTCATACTTTCTTTTTCTGCCAGGGTGGTCAACAGAAATCTTCGGCACAGTGTAATAGATTTACCCCTCCCACCCCTTAA 1278 0.5039 MGSLCFPLFAIMIIAICGLLLILGAESKTHWGDAEVLKQLKQGLDPASVNPGSCVSSWDFTVDPCDNLFGHKFTCGFRCDVIVSGLSRVTELALDQAGYAGSLTLLTWNLPYLQTLDLSNNYFSGQIPDSLSNLTRLTRLTLSSNSFSGQIPSSIATLSNLQELYLDNNNLRGTIPGTFSNLANLKRLELQSNKLNTRLPNLGSLKNLKFLYLSDNFVTGTFPASLPVSLVQISIRNNNLSGVLIGESFKNLKRLQVVDFSSNQLSGSVPSVFFELPSLQQLTLSFNEFTKLEAPYKGVESQSGLIAVDLSNNKLQGYLPSFMAVMPKLSSLSLENNELTGRIPTQFGVKTVFPEKGVSSFGRLLLGGNYLLGGIPRPLLALKRDSANVSLVDNCLYRCPHTFFFCQGGQQKSSAQCNRFTPPTP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1242 425 SMART LRR_typ_2 110 134 IPR003591 -
Aed11g1242 425 SMART LRR_typ_2 182 205 IPR003591 -
Aed11g1242 425 SMART LRR_typ_2 158 181 IPR003591 -
Aed11g1242 425 SMART LRR_typ_2 252 275 IPR003591 -
Aed11g1242 425 SMART LRR_typ_2 276 302 IPR003591 -
Aed11g1242 425 SMART LRR_typ_2 326 350 IPR003591 -
Aed11g1242 425 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Aed11g1242 425 Gene3D Ribonuclease Inhibitor 200 297 IPR032675 -
Aed11g1242 425 Gene3D Ribonuclease Inhibitor 298 401 IPR032675 -
Aed11g1242 425 Gene3D Ribonuclease Inhibitor 32 199 IPR032675 -
Aed11g1242 425 SUPERFAMILY L domain-like 53 376 - -
Aed11g1242 425 Pfam Leucine rich repeat 230 288 IPR001611 GO:0005515
Aed11g1242 425 Pfam Leucine rich repeat 159 216 IPR001611 GO:0005515
Aed11g1242 425 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 422 - -
Aed11g1242 425 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 422 - -
Aed11g1242 425 Pfam Leucine Rich Repeat 113 134 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1242 Aed-Chr11 17623174 17624451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1242 86 380 Receptor kinase-like Gene Family AT3G11080 30.172 9.72e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1242 - - gmx:100811366 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1242 11 17623174 17624451 Aed11g1242 11 17623174 17624451 ECH