Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1238 ATGGAGCCGCAGCTTCAGCCGAAGCTGGGCCCCGCGGCACAGGTCGTGATTGGTGGCGGTGGGGATTCCGAGAAATCGCATGTCACGGAAGTTCGTGACGTTGACATGGCTGAGGCCAACGGTGGTGGTTGTTGCGCGTCCGTTTTGAAACGGAAGCGTGGTCGTCCGGCAAAGGCAAACCGCGTTCCGAAGGGGATGACACCGCCGTTGAGGCAGAAGAGGGAAGAAGAGGATGTTTGCTTCATATGCTTTGACGGTGGAAGCCTCGTTCTCTGTGATCGCCGTTTCAGTATGGGTTTTACTATACTGCAAGTGAGGGTTTGTTTATTCAGTTGTCATCATTGGAGTGTTTATCTTATCTCTCTAACACTCCCTTTCTCTCTCTCTCTCTCTCCTTTTTTAGGGGATGCCCTAAAGCGTATCATCCCTCGTGTATTAAGCGAGACGAGTCATTTTTTCGCTGCAAGGCCAAATGGAATTGCGGTATGTTGGCATATATGTAGCGCTTGTGGGAAGGGATCACATTATATGTGCTATACTTGTACGTATTCTTTGTGCAAGGGATGTACAAAAGTTGCTGATTTTGTCTCTGTCAGAGAAAATAAAGGTTTGTGTGGAGTATGCAAGAGAACTATAATGCTGATAGAGAATTGTGCCCAGGGCGATAAGGCGTGTGAGGTGGATTTTGACGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGACATATTTGAAGGAGAAGCTATCTTTGACATTTGATGAGATCCTTCAAGCTAAAAACCCATGTAAAGGAGTCACAAGATTAGAAGCATCTGGTGTTGCAGTGGATGTTTCATCAATACTTCTCTCTCCAAAGATGGAGCTGCCAATCAGCAATTTTGCGATTAATAAACCGTGGCATTATCAGGATCCAACCGGGACGGTTCAAGGACCTTTCTCTTTATTGCAGCTGTATAAGTGGAATGAAAGTGGATATTTTCCTCCAGATCTCAGAATATGGGGGATAGATGAGACACAAGATAACTCTACATTGTTAACTGATGTGCTGAGTGCGAAGTGTTCAAAAAATGTGTCATTGCCGAGCAACAGCCAACAGCTGTCTTTGGGAACCAATAGTACATTGGAAAATAAAGTAAATAGTCAGGATGGTGGGGAGAACAATGTGACAAGGAATGGAAATTTTGCTAACCATCAAATTGTTGAGCAGTGTGGGGAGCAAAAAGTGGCTGATACTTGTACACAATCTAATGGTAAAGATGAATCTGTTAGGAGCAATGGTTGGAACTTAGAGTCTCCGGGTTTGACGATACAAGCAGATGGGAATAACAATGAGGGGCAAAGTGGAAATTCGGAAAAGAGGGAGGAATCACCCAAATGTAAAATTTCTTGTCATGATGGCTCCCATGTGTACCCTTCACTGCCTTCAACTGCATTTTCTGAGAAACTGAAGGAGAATCCTTCTGATAAATTAACGGAAGATCATAAGATTGAGGTAAAGTCTGAAGATAATGGAAATTTTGACTTAAACAAAATTTCTGAGGGTCAGAGTAATAGTGGGCAAAGTTGTCATAAACAATCAGACAGTGAGGAGAATTCAGGTCTATCTTCTGGTCAGAACTGGAGATGCCCTGATGTAACTAATCCAGTATGTAACATGTCTACGTGGTTATCAATCTTTGGCGAACCAAATGATTTCGATGAGTCAGTTTCAGATCTGTTGGCTGAAGTGGAGGCAATGGAGACACTTGGTGGCTTGGAATCTCCCGTTTCACTCATGACTTGTGAGGACTTGACTGACGGTTCTATAACTGATTGTCTTAGTTTTGCAGATGCGCTTAGCCCAATGCTTGGCGCAGGTAAGGGTGATGCACTAAGCTCCTCAGGTGATGTACAGTTACCATCTCAAACCACAACTCCAGATGAACCGTTTAAGCAAGCAGGTGTAAATGATCATCATCCAAAAATATCTGGGAAGCATTCATCAAAGAGTTCAGAAGTTGAGTCTACTTTCTCTAAGTTTAGCTGGGATCCAACCATTCAATTTTCCTTAGATCCTCCTAATTGTAAGTTGCTTCTCCACTTTCTCAGCAAGTTACTATCATATTTCGTTGACATGACAGATTATGTTGAAGGTCGTTTTTCTTATCTTTAG 2157 0.4325 MEPQLQPKLGPAAQVVIGGGGDSEKSHVTEVRDVDMAEANGGGCCASVLKRKRGRPAKANRVPKGMTPPLRQKREEEDVCFICFDGGSLVLCDRRFSMGFTILQVRVCLFSCHHWSVYLISLTLPFSLSLSPFLGDALKRIIPRVLSETSHFFAARPNGIAVCWHICSACGKGSHYMCYTCTYSLCKGCTKVADFVSVRENKGLCGVCKRTIMLIENCAQGDKACEVDFDDKSSWEYLFKVYWTYLKEKLSLTFDEILQAKNPCKGVTRLEASGVAVDVSSILLSPKMELPISNFAINKPWHYQDPTGTVQGPFSLLQLYKWNESGYFPPDLRIWGIDETQDNSTLLTDVLSAKCSKNVSLPSNSQQLSLGTNSTLENKVNSQDGGENNVTRNGNFANHQIVEQCGEQKVADTCTQSNGKDESVRSNGWNLESPGLTIQADGNNNEGQSGNSEKREESPKCKISCHDGSHVYPSLPSTAFSEKLKENPSDKLTEDHKIEVKSEDNGNFDLNKISEGQSNSGQSCHKQSDSEENSGLSSGQNWRCPDVTNPVCNMSTWLSIFGEPNDFDESVSDLLAEVEAMETLGGLESPVSLMTCEDLTDGSITDCLSFADALSPMLGAGKGDALSSSGDVQLPSQTTTPDEPFKQAGVNDHHPKISGKHSSKSSEVESTFSKFSWDPTIQFSLDPPNCKLLLHFLSKLLSYFVDMTDYVEGRFSYL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1238 718 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 549 671 - -
Aed11g1238 718 CDD GYF 301 351 IPR003169 GO:0005515
Aed11g1238 718 MobiDBLite consensus disorder prediction 647 663 - -
Aed11g1238 718 MobiDBLite consensus disorder prediction 509 542 - -
Aed11g1238 718 ProSiteProfiles GYF domain profile. 298 352 IPR003169 GO:0005515
Aed11g1238 718 MobiDBLite consensus disorder prediction 413 542 - -
Aed11g1238 718 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 30 95 - -
Aed11g1238 718 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 291 559 - -
Aed11g1238 718 MobiDBLite consensus disorder prediction 450 464 - -
Aed11g1238 718 Pfam GYF domain 301 341 IPR003169 GO:0005515
Aed11g1238 718 Gene3D - 300 356 IPR035445 -
Aed11g1238 718 SMART gyf_5 299 354 IPR003169 GO:0005515
Aed11g1238 718 MobiDBLite consensus disorder prediction 629 645 - -
Aed11g1238 718 MobiDBLite consensus disorder prediction 413 449 - -
Aed11g1238 718 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 164 270 - -
Aed11g1238 718 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 30 95 - -
Aed11g1238 718 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 291 559 - -
Aed11g1238 718 MobiDBLite consensus disorder prediction 360 393 - -
Aed11g1238 718 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 549 671 - -
Aed11g1238 718 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 164 270 - -
Aed11g1238 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 213 IPR013083 -
Aed11g1238 718 SUPERFAMILY GYF domain 297 352 IPR035445 -
Aed11g1238 718 MobiDBLite consensus disorder prediction 484 508 - -
Aed11g1238 718 MobiDBLite consensus disorder prediction 622 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1238 Aed-Chr11 17558632 17563016 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1238 - - gmx:100800608 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1238 11 17558632 17563016 Aed11g1238 11 17558632 17563016 ECH