Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1191 ATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGACGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCGTTAGTTCCTTTTTCTCTCTTTTTAAAAATCAAAATTTGAAGAAATTCAGCTGCATTTGCATGTCATCTCCATTTGGGGAAGATTATGTGCCGACTGTTTTTGACAATTTCAGCGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATACTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTGCCTTGACCATCCTGGTGCCGTGCCTATTACCGCAGCTCAGGGAGAAGAGCTTAGGAAGCTGATTAATGCGCCAGCTTACATTGAATGCAGTTCAAAATCACAGGAGAACGTGAAGGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCTAAGCAGAAGAAAAAGAAGGGTAAAGCACAAAAGGCCTGTTCGATATTGTGA 675 0.4415 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTVSSFFSLFKNQNLKKFSCICMSSPFGEDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCLDHPGAVPITAAQGEELRKLINAPAYIECSSKSQENVKAVFDAAIRVVLQPPKQKKKKGKAQKACSIL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1191 224 CDD Rop_like 6 205 - -
Aed11g1191 224 PANTHER RHO FAMILY GTPASE 1 34 IPR003578 GO:0005525|GO:0007264
Aed11g1191 224 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 54 224 - -
Aed11g1191 224 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 34 - -
Aed11g1191 224 TIGRFAM small_GTP: small GTP-binding protein domain 60 198 IPR005225 GO:0005525
Aed11g1191 224 Pfam Ras family 55 205 IPR001806 GO:0003924|GO:0005525
Aed11g1191 224 Pfam Ras family 8 34 IPR001806 GO:0003924|GO:0005525
Aed11g1191 224 ProSiteProfiles small GTPase Ras family profile. 2 224 IPR001806 GO:0003924|GO:0005525
Aed11g1191 224 ProSiteProfiles small GTPase Rab1 family profile. 2 224 - -
Aed11g1191 224 SMART rab_sub_5 7 207 - -
Aed11g1191 224 SMART rho_sub_3 9 207 IPR001806 GO:0003924|GO:0005525
Aed11g1191 224 PANTHER RHO FAMILY GTPASE 54 224 IPR003578 GO:0005525|GO:0007264
Aed11g1191 224 SMART ras_sub_4 4 207 - -
Aed11g1191 224 Gene3D - 5 219 IPR027417 -
Aed11g1191 224 PRINTS Transforming protein P21 ras signature 182 204 - -
Aed11g1191 224 PRINTS Transforming protein P21 ras signature 7 28 - -
Aed11g1191 224 PRINTS Transforming protein P21 ras signature 74 96 - -
Aed11g1191 224 PRINTS Transforming protein P21 ras signature 136 149 - -
Aed11g1191 224 ProSiteProfiles small GTPase Rho family profile. 1 204 - -
Aed11g1191 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 205 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1191 Aed-Chr11 17230285 17232444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1191 7 207 EF-hand Containing Proteins AT5G27540 23.267 1.73e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1191 K04392 - gmx:100812451 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0212 9 1501686 1504414 Aed11g1191 11 17230285 17232444 ECH
Aed11g1191 11 17230285 17232444 Aed11g1191 11 17230285 17232444 ECH