Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1138 ATGAACCACAACAAACGAGGCGTGCTTGCTCGTTTGAAGACTCTCGTCAACTCTCACTCTCAGAGCTTCCATTCCCCTGCGCCCAAACGACCAAAGCAAGATCGATCGTCACCAGAAAAAGACTTAGATGACTCTGTTTGCCGAGGGCGCATTGATGTCTCAAAATGGAAGACTTTGGATGCAGGGGAGCTTGGTGTAACTAGTTCTATGATTTCATACCCATCTCAGTTTGTCCTGAAACTTTTACAGAGCAAAGGATTTGAGTCATACTTAGTAGGTGGGTGTGTGAGAGATCTACTACTGAATAGAACTCCGAAAGATTTTGATGTTGTCACCACAGCAAAGCTGATGGAGGTGAAAAAGAAGTTTCGTGGTTCAGCTCGCGCCAAAGTGGTTGGACGTCGTTTTCCAATTTGCTTGGTTTATATAAGAGGTTCTGTAGTTGAGGTAACCAGTTTTGAGACAGTGGCACGAACTTCCAATAGGAAGGAAGAATTTTTATACTCTCTGTTGCCCAAATGCAGTAATAAAAAGGACTTATTTCTCTACAAAAACTCCTTGCGCAGGGACTTCACAATTAATAGCAGTTTATTTTATGACCCTTTTGCCAATAAAATCTATGATTATACTGATGGAATGGCTGATTTGAGGTCCTTAAAGCTAGAAACTGTTATCCCTGCTCAGATGTCCTTTAAAGAGGATCCTGGGAGAATTTTGCGTGGCTTCAGAATTGCAGCTCGGCTTGGCTTATCATTATCAAGGGAGACTGAGGCTGCAATGTGGAAATATTCTTCACTTCTTAAGAGCTTGGACAAGAATAAAATGATGATTGAATTGAACTACATGCTGTCTTATGGAGCTGCTGAACCATCTCTGCGTCTACTTTGGAAATTCAAATTGCTTGAATTTTTACTTCCTGTGCATGCAGCATATCTTGATGAGCAAGCGATTGAAGAAGATGCTCTGGCTTCCAATATGTTTATGAAATTATTCTTCCATCTTGATAATATGGTTGCATGCGATAGACCTTGTGATTGCACTCTATGGATAGGATTGCTAGCATTTCACCTGACATTAGTAAATGATCCTCAGGATGCTGTAGTGGTGTGGGCATTTGCTTCTGTTCTATATCATGGGGAGTGGGAAAAAGGTATTAAATTTGCCAAAGAACATGCAAAAATGATTGTTAATTTTGCACCTGAAATAAGGACATCCAGTGTATACAAATCAGATGAAGAAATTGCAAAAGAAGTCACTAAATTGGCATCTTTGGTGATGCACTCCATACCTGCTCTGATTGAGAACAATAGTCTTCTTCAATCCATGTCTAGATACCCATCTTTTCCACAATCTGCCATGGTATTTTTACCCAAGAAAGCAGGGAAACTTGCTTCTATGATTTTCAAAATGCTGGCCACTGATGTTGAATTTTATAAGTCTGAAAGAAGAAAAAATTCAACAATAAATTATGACATGCTTGGGAAGGGACACCTTTCAGAGACTGCATTTGTTTTGGGCAAAATTGTTCTTGAAACTATGAGTAGTGGAACTATTGGGGATGGGGGGGATTCTGAAGCTGGACAATGTCACCTTAAGACTGAGGGCACCAAAGAAATTACTCAATCGCAACTTCCAGATCTAGTAAACCATGAAATGGTGGCAATGAATGGTGAAGGACAACTGTTATCAATGCCAGATTCAGAATGTAGGCAAGGAAAAAACAAGAGACAGAAATTGGTTGAGAATAGATGTATTGCAAAGAAGAAAATGGGCTCAGGGGACCAAAAGTTGTCTGAGAAATTTGAATACAAGGAAAATAAAGAAGAGCACCAAAATATAGTTAAGTTAAGCCAGAAGGTTGATCTGTCTACAAAGGACTCTTTGCCCAAAAAGAAAAATGATCACAGAAAACGGATGATAAGTGATAGGGAGAAAAGCACCAGTGCCAGTGAAAGTTATTTAGACCATGCTAGGCATATGAAGACAGATGTACACAGTACATGTATGCCATCACAATCTACGGTATCCAAGAATCATCAGGTGATAGCTAACAACAACATAGACATGGATGCAAAAACAACAAATGAGGCCGACTTGAAGAAAAAAAAGGGTTTATCACTAGTTGAAATATTTAAAGTGAAAGAAAGACAGAAACCACATAAAAAACAAGCAAAGTAA 2178 0.393 MNHNKRGVLARLKTLVNSHSQSFHSPAPKRPKQDRSSPEKDLDDSVCRGRIDVSKWKTLDAGELGVTSSMISYPSQFVLKLLQSKGFESYLVGGCVRDLLLNRTPKDFDVVTTAKLMEVKKKFRGSARAKVVGRRFPICLVYIRGSVVEVTSFETVARTSNRKEEFLYSLLPKCSNKKDLFLYKNSLRRDFTINSSLFYDPFANKIYDYTDGMADLRSLKLETVIPAQMSFKEDPGRILRGFRIAARLGLSLSRETEAAMWKYSSLLKSLDKNKMMIELNYMLSYGAAEPSLRLLWKFKLLEFLLPVHAAYLDEQAIEEDALASNMFMKLFFHLDNMVACDRPCDCTLWIGLLAFHLTLVNDPQDAVVVWAFASVLYHGEWEKGIKFAKEHAKMIVNFAPEIRTSSVYKSDEEIAKEVTKLASLVMHSIPALIENNSLLQSMSRYPSFPQSAMVFLPKKAGKLASMIFKMLATDVEFYKSERRKNSTINYDMLGKGHLSETAFVLGKIVLETMSSGTIGDGGDSEAGQCHLKTEGTKEITQSQLPDLVNHEMVAMNGEGQLLSMPDSECRQGKNKRQKLVENRCIAKKKMGSGDQKLSEKFEYKENKEEHQNIVKLSQKVDLSTKDSLPKKKNDHRKRMISDREKSTSASESYLDHARHMKTDVHSTCMPSQSTVSKNHQVIANNNIDMDAKTTNEADLKKKKGLSLVEIFKVKERQKPHKKQAK 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1138 725 Gene3D Beta Polymerase, domain 2 56 218 IPR043519 -
Aed11g1138 725 MobiDBLite consensus disorder prediction 28 44 - -
Aed11g1138 725 Gene3D - 221 487 - -
Aed11g1138 725 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 5 711 - -
Aed11g1138 725 SUPERFAMILY Nucleotidyltransferase 66 217 IPR043519 -
Aed11g1138 725 MobiDBLite consensus disorder prediction 18 44 - -
Aed11g1138 725 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 5 711 - -
Aed11g1138 725 CDD NT_ClassII-CCAase 76 217 IPR002646 GO:0003723|GO:0006396|GO:0016779
Aed11g1138 725 Pfam Poly A polymerase head domain 90 220 IPR002646 GO:0003723|GO:0006396|GO:0016779
Aed11g1138 725 MobiDBLite consensus disorder prediction 621 651 - -
Aed11g1138 725 Pfam Probable RNA and SrmB- binding site of polymerase A 249 311 IPR032828 -
Aed11g1138 725 MobiDBLite consensus disorder prediction 624 651 - -
Aed11g1138 725 SUPERFAMILY Poly A polymerase C-terminal region-like 221 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1138 Aed-Chr11 16880725 16886965 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1138 - - gmx:100794882 1244.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1138 11 16880725 16886965 Aed11g1138 11 16880725 16886965 ECH