Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1127 ATGATCCGGCGGCACGCAGTGTTTGACCCAGAAGTGGCAAGCAATGTGTGTGGTGTGATTAAACCATTTTTGCTGTCTCTGGCAAAGACTTCAAACCCCATTTCTCTGAGACGGTGCAACCAAATCCACGCAAAGCTCATAGTCTCCCAATGCATTTCAATAACCCACTTAACCAACACCCTCTTGAGCCTCTACGCCAAATTTGGACACTTTCGCCATGCCCACATCCTGTTCGACCAAATGCCTCACAGGAACGTTGTCTCCTGGACAACCTTAATTTCCTCGCATCTCCGTACTGGGTCCCTTTCAAAAGCCTTTGAGTTGTTCAATCACATGCGTGCAACTAATGAGAGGCCCAATGAGTACACCTTTTCTGTCCTGCTTCGAGCTTGTGCCACTCCTTCATTGTGGGATGTGGGCTTGCAGATTCATGGCCTGCTGGTTCGGTCTGGGCTTGAGAGAGACAAGTTTGCTGGGAGCTCTATTGTGTATATGTACTTTAACAGTGGTAGTAATCTCGGTGATGCGTGTCTCGCCTTTCATGACTTGTTGGAGAGAGACCTTGTTGCATGGAATGTTATGATTTCTGGGTTTGCTCATGTTGGTGACTTTAGCATGGTTCATAGGTTGTTTTCTGATATGCGGGGACTCGAAGGCTTGAAACCTGACTATAGTACCTTTGTTAGCTTACTCAAGTGCTGTTCTTTGTTGAAAGAGTTAAAGCAAATTCATGGGATTGCATATAAGTTTGGTGCCGAAGTTGATGTTGTAGTGGGCAGTGCTCTGGTTTACTTGTATGCCAAATGTGGGGATGTAAGTTCTTGCAGGAAAGTGTTTGACTCCATGGGGGAGAAGGATAATTTTATTTGGAGTTCTATCATTTCAGGCTATACCATGAATAATAGAGGGGAGGAAGCTGTGCAGTTCTTCAAGGACATGTGTAGACAAAGGGTGAGACCAGATCAGCATGTGTTATCGAGTACTTTGAAAGCTTGTGTTAAACTAGAGGACTTGAACACAGGAGTTCAAATGCATGGCCAAATGATAAAACATGGTTATCAAAGAGATTGTTTTGTAGCAAGTGTGTTGTTGACTCTCTATGCCAGTGTGGGTGAACTTGTGGATGTGGAAAAGTTGTTCAGAAGAATTGATGATAAAGATATTGTAGCATGGAACTCAATGATCATGGCTCATGCTCGGTTGGTGCAGGGATCTGGGCCCTCTATGAAACTATTACAAGAACTTCATGGAACGACCTCTTTGCAATTTCAAGGTGCCACCTTGGTTGCTGTTTTAAAGTCTTGTGAGAATAAATCAGATTTGCTTTCAGGCAGGCAAATTCATTCACTTATAGTGAAATCGAGTGTAAGTAATCATACCTTGGTTGGCAATGCATTAGTCCACATGTACTCTGAGTGTGGTCAAATTGGTGATGCATTTAAAGCTTTTGTTGACATTGTCGGGAAGGATGATGGTTCTTGGAGTTCTATTATTGGAACTTATAAACAAAATGGGATGGAATCAGAAGCTTTAGAGCTATGCAAAGAGATGTTGGTTGATGGAATCACTTTTACCAGTTATAGCCTTCCACTGTGTATTTCGGCTTGCTCACAACTTTCAGCTATACATGTGGGTAAACAGCTCCATGTTTTTGCTATCAAGTCTGGTTACAACCATGATGTGTATGTTGGAAGTTCCATTATAGATATGTATGCCAAATGTGGAACCATGGAGGATTCAGAAAAAGTTTTTGGTGAACAAGTAGAGCCAAATGAAGTAATTTATAATGCCATGATCTGTGGATATGCTCATCATGGAAAAGCACAACAAGCAATCGAAGTGTTCAGTAAGTTAGAGAAGAATGGTTTGACCCCCAATCGTGTAACTTTCTTAGCTGTGCTATCAGCTTGTAGCCATTCGGGTTATGTAGAAGATACCATGCATTTCTTTACATTGATGTTTAGCAGATACAATACTAAGCCAGAATCTGAGCATTATTCGTGCTTAGTTGACGCCTATGGCCGGGCAGGAAGGCTGGAGGAAGCTTACCAAATAGTGCAGAAGGATGGAAGTGAATCAGCATGGAGAACGTTACTAAGTGCCTGTAGTAATCATAACAACACTAAAATTGGAGAAAAATCTGCAATGAAGATGATAGAATTGAATCCCAGTGATCATGCTTCGTATATTCTTCTTTCAAATATGTACATGGGAGAGGGAAAATGGGAAGAAGCTCTTAAATGTAGGGAGAAAATGGCTAAGATTCGTGTGAAAAAAGATCCGGGAAGTAGTTGGTTGATCTGA 2304 0.4197 MIRRHAVFDPEVASNVCGVIKPFLLSLAKTSNPISLRRCNQIHAKLIVSQCISITHLTNTLLSLYAKFGHFRHAHILFDQMPHRNVVSWTTLISSHLRTGSLSKAFELFNHMRATNERPNEYTFSVLLRACATPSLWDVGLQIHGLLVRSGLERDKFAGSSIVYMYFNSGSNLGDACLAFHDLLERDLVAWNVMISGFAHVGDFSMVHRLFSDMRGLEGLKPDYSTFVSLLKCCSLLKELKQIHGIAYKFGAEVDVVVGSALVYLYAKCGDVSSCRKVFDSMGEKDNFIWSSIISGYTMNNRGEEAVQFFKDMCRQRVRPDQHVLSSTLKACVKLEDLNTGVQMHGQMIKHGYQRDCFVASVLLTLYASVGELVDVEKLFRRIDDKDIVAWNSMIMAHARLVQGSGPSMKLLQELHGTTSLQFQGATLVAVLKSCENKSDLLSGRQIHSLIVKSSVSNHTLVGNALVHMYSECGQIGDAFKAFVDIVGKDDGSWSSIIGTYKQNGMESEALELCKEMLVDGITFTSYSLPLCISACSQLSAIHVGKQLHVFAIKSGYNHDVYVGSSIIDMYAKCGTMEDSEKVFGEQVEPNEVIYNAMICGYAHHGKAQQAIEVFSKLEKNGLTPNRVTFLAVLSACSHSGYVEDTMHFFTLMFSRYNTKPESEHYSCLVDAYGRAGRLEEAYQIVQKDGSESAWRTLLSACSNHNNTKIGEKSAMKMIELNPSDHASYILLSNMYMGEGKWEEALKCREKMAKIRVKKDPGSSWLI 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1127 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 222 IPR002885 -
Aed11g1127 767 Pfam PPR repeat family 84 132 IPR002885 -
Aed11g1127 767 Pfam PPR repeat family 590 638 IPR002885 -
Aed11g1127 767 Pfam PPR repeat family 286 334 IPR002885 -
Aed11g1127 767 Pfam PPR repeat family 187 234 IPR002885 -
Aed11g1127 767 Gene3D Tetratricopeptide repeat domain 36 136 IPR011990 GO:0005515
Aed11g1127 767 Gene3D Tetratricopeptide repeat domain 236 338 IPR011990 GO:0005515
Aed11g1127 767 Gene3D Tetratricopeptide repeat domain 405 547 IPR011990 GO:0005515
Aed11g1127 767 Pfam E motif 705 766 IPR046848 -
Aed11g1127 767 PANTHER BNACNNG15330D PROTEIN 20 400 - -
Aed11g1127 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Aed11g1127 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Aed11g1127 767 PANTHER BNACNNG15330D PROTEIN 409 517 - -
Aed11g1127 767 PANTHER - 508 766 - -
Aed11g1127 767 Gene3D Tetratricopeptide repeat domain 339 404 IPR011990 GO:0005515
Aed11g1127 767 Gene3D Tetratricopeptide repeat domain 585 766 IPR011990 GO:0005515
Aed11g1127 767 PANTHER - 409 517 - -
Aed11g1127 767 SUPERFAMILY TPR-like 603 756 IPR011990 GO:0005515
Aed11g1127 767 TIGRFAM PPR: pentatricopeptide repeat domain 87 121 IPR002885 -
Aed11g1127 767 TIGRFAM PPR: pentatricopeptide repeat domain 593 626 IPR002885 -
Aed11g1127 767 TIGRFAM PPR: pentatricopeptide repeat domain 189 223 IPR002885 -
Aed11g1127 767 TIGRFAM PPR: pentatricopeptide repeat domain 666 687 IPR002885 -
Aed11g1127 767 TIGRFAM PPR: pentatricopeptide repeat domain 289 321 IPR002885 -
Aed11g1127 767 PANTHER BNACNNG15330D PROTEIN 508 766 - -
Aed11g1127 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 591 625 IPR002885 -
Aed11g1127 767 PANTHER - 20 400 - -
Aed11g1127 767 Pfam PPR repeat 565 586 IPR002885 -
Aed11g1127 767 Pfam PPR repeat 261 285 IPR002885 -
Aed11g1127 767 Pfam PPR repeat 665 687 IPR002885 -
Aed11g1127 767 Pfam PPR repeat 493 522 IPR002885 -
Aed11g1127 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1127 Aed-Chr11 16804918 16807221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1127 92 766 Glycoside Hydrolase AT3G49170 29.710 5.94e-103 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1127 - - gmx:102667531 1360.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1127 11 16804918 16807221 Aed11g1127 11 16804918 16807221 ECH