Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1119 ATGGCGAGCATAAAGCCTTTGCCGGAGGCTCTGCGTAGCTCACTGCGTTCTGGCATTTTCCTCTTCGACTTCACGCGTGTCGTCGAGGAACTGGTTTTCAACAGCCTCGATGCTCGTGCCACAAAGGTATCAGTGTTTGTTAGTACTGGGAGCTGCTATTTGAAAGTTGTTGATGATGGAAGTGGAATCACTCGAGATGGACTGGAATTGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAATTTGGTCGACCTGAATGCCACAAGTGAGAACTTTGGTTTTCGTGGGGAAGCTTTAGCTTCCATTTCTGAAGTCTCTTTGCTGGAAATTGTGACTAGAACATATGGAAGGCCAAATGGATATCGAAAAGTATTGAAGGGGTGCAAGTGTTTATGTCTTGGTATTGATGATGATAGAAAGGAAGTGGGCACCACAGTTGTTGTCCGTGATTTATTTTACAACCAACCAGTTCGGAGAAAATACATGCAATCCAGTCCCAATAAGGTACTGCAATCAATCAAGAAATGTGTAATGCGGCTTGCACTTGTGCACTCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATGAGCTCTTTTGCACACATGCTGCTTCTTCTCCTCTGTCACTTGTAACCAGTGGCTTTGGGGTAGAGGTCACAAGCTCTCTTCACAATTTAGAAGTTGAGAATGATATCATAAAGCTTTCTGGATACATATCCGGGCCTTGCAATACTTTGAATATGAAGGGCCCAATTCATAAGCTTGTGAGTCAACTGGCTATTAGGTTTGAGCATCTGAACTCATGGAATACTGATGATGAGTTCCGAAACAAGAAGAGAACCAGCTGTCAACCATGTCCAGCTTATCTCTTGAATTTAAGTTGCCCCCGATCTTTGTATGATTTGTCCTTTGAGCCATCAAAAACTCATGTTATATTCAAGGATTGGACTCCTATACTAAACTTCATTGAGAAGGCCATCAAACAATTCTGGGAGGAAAACATAGCTTGTGTAGAGCCCTCCAATCAGGCCACATACATGGTAGAAGTTCAACAAGAGAAAGCAGATGTCAACATCATTTCAGCAGTATCACTATCAGATATGTCAAAGTTTAGAAACCAAAATCGTAAGGATTGCCTAGACCTCTTCTTTTCTACTTCAGATAATCTAATTGAAGATGACTATCATCAATCCAACAGGGAAGATGTTAGGACCTCTGTTGATCACCTAGGGGCTACAATGTTCAAAGAGCAACAGAGTAAGGGAGACTTTCTTCTTCAGACTGGTTATTCTGGCAACTTTTTGGATGGTTCATTTGCCGGGTGCAAGTCCACTGTGATGAGAAAGCATAACAGATTTTTGATGCATGATAGCAATAGTTTATTGGAAGGAGATAAATTTTTTGATGGTGAAATTCCCACAGTAGAAAGTTTCAATATTGATGTACCTTTTGATGCACCGAGCTCTTCACATGGAAGAAGATTCCATAAAGTAGAAGCTGATCTGATCAATGAATCATTTGGAGATGATTTACTTCATAATTGCAGTGGGTATGGTTATGATGTAAAGATTAATGGGGATTTGCAAAAACCTTTTCTAAGGAGATGCTCTACACTAGGAAGTAGCCTGCATGAGAAGGCTTTGTTTGTGAATGATGAATATGAACTCCAAACTGATAGCTTTTGGAGCAAGCAGAATATGGAGGAGGATTATAAAAGTGGTAAGGATTTATATGCCCATCCCTATCCAGAAGTCACAAAAAAGTTAAAGATGTCTAAAGATTCTGATTTTCTCATTAGACCGTTGGCTGAAGAAAATTGTCTCCCACCAAATTCATATTATTCAGCATCACAAATAGGAAGCTCTGGGTCAGATGACCAGTTATTAAATTTTGAATGGCCTCCTGTCTACCAAAAACCCTCATCTCAAGCATCTACATTGGGTGTTTATCATACAACTGATATTAAAGATGATGTTGGAGGATTATCTAGATACTATAATAGGATCCATCATACAAAACATTTTGACGATAGAGAAACTGAATGCAAATTCAGCCACAATATTTCAAGGAATGCCAACCAACATCGCTGTGCATCAAGTTTTGCAAATATTGGATTTGATTTTGATGTTGCTGGTGATTGTGGTGAAATATTCAACACACTAGTTGATGGGCCTGATTTTGGTGAAATATATTCTACAAAAAGGTCAGATATTTTAAACGAGGAGCCAGACTGGCTGTTTCCCGAGTCATGTATTAAAAGCTGCAAGAGACCTAACAAGAACAAAGGCAAAAGGGATCAATTTAGAAATTCAACTTTGGAGGAGAATCCTGAAAGATCTAGAAGAAGCTTTTCAGCTCCTCCTTTTCATAGAAGCAAAAGGAAGTTTTTCTCTTTAAATCATCCTTCAGAAACAATAGCCAAAAGACAGATTGGCCAAGTGTCCAACCCCAATCATCAAGAAGCTAGTAATTTTAAATATCCTCAACAGTCTCCTATTCCACTTCACCAAGGCACTAAAGATCTCTTATTGCAAGAATTCAAAATTAACGTGAAACAAACTTCGGATGTTCTGGGAGATATGCAGGTCAATGACATTACAGAGATTGATGGATTTGGAAGTTCCAACATTCAAAACAGTGCTCCATTTGGGGAGTTGATCTCTAAGGATGTGCAAGATTCCATAGATTACGGGACTAAATGGAGGAATTGCTCACCCAAAATTACAAAGAATGATAAATTGACTAATATTCAAAGTCAAAACAATATACTTGACATTTCTTCTGGATTCTTGCATCTTGCTGGAGATTCATTGATTCCTGACATCATCAGTAAGAAATGCCTCAAGGATGCTAAAGTTCTGCATCAAGTGGATAAAAAATTCATTCCAGTCGTGGCTGGCAGAACCCTTGCTGTTATTGATCAGCATGCTGCAGATGAAAGAATCAGACTGGAAGAATTGCGTCAAAAGGTATTGTCTGGAGAAGCAAAAATGATAACCTATCTAGATGCTGAACAGGAACTGGTACTGCCAGAGATTGGTTTTCAACTACTTCATAGTTATAGTGAACAGATTAAAGATTGGGGCTGGATCTGCAACATTCATGGTCAAAATTCTGAATCCTTTAGAAGGAATTTGGATATTCTCAACAGACCACAAATGGCCATCACACTTATTGCGGTACCATGTATTTTAGGGGTCAAATTAAATGATGTTGATCTTTTAGAATTTCTTCAGCAGCTTGCTGACACCGATGGATCATCAACAATGCCACCCTCTGTCATACGAGTGCTAAATTTGAAAGCCTGCAGAGGTGCAATTATGTTTGGGGATTCATTGCTACCATCAGAATGTTCCCTTCTAGTTGAAGAGCTAAAGCATACATCGCTTTGTTTCCAATGTGCTCATGGGCGACCAACAACCGTTCCTCTAGTGAACTTAGAGGCACTGCATAATCAGATAGCCAAACTTCGACTGATGAACGAGGGCTCAAGTGACGAGTGGCATGGATTACATAGACATAAAGTATGCCTTGAACGTGCAGCACAGCGTTTAAATTCTGCTACAGGAATTTGA 3585 0.3947 MASIKPLPEALRSSLRSGIFLFDFTRVVEELVFNSLDARATKVSVFVSTGSCYLKVVDDGSGITRDGLELVGERYATSKFLNLVDLNATSENFGFRGEALASISEVSLLEIVTRTYGRPNGYRKVLKGCKCLCLGIDDDRKEVGTTVVVRDLFYNQPVRRKYMQSSPNKVLQSIKKCVMRLALVHSNISFKVVDIEREDELFCTHAASSPLSLVTSGFGVEVTSSLHNLEVENDIIKLSGYISGPCNTLNMKGPIHKLVSQLAIRFEHLNSWNTDDEFRNKKRTSCQPCPAYLLNLSCPRSLYDLSFEPSKTHVIFKDWTPILNFIEKAIKQFWEENIACVEPSNQATYMVEVQQEKADVNIISAVSLSDMSKFRNQNRKDCLDLFFSTSDNLIEDDYHQSNREDVRTSVDHLGATMFKEQQSKGDFLLQTGYSGNFLDGSFAGCKSTVMRKHNRFLMHDSNSLLEGDKFFDGEIPTVESFNIDVPFDAPSSSHGRRFHKVEADLINESFGDDLLHNCSGYGYDVKINGDLQKPFLRRCSTLGSSLHEKALFVNDEYELQTDSFWSKQNMEEDYKSGKDLYAHPYPEVTKKLKMSKDSDFLIRPLAEENCLPPNSYYSASQIGSSGSDDQLLNFEWPPVYQKPSSQASTLGVYHTTDIKDDVGGLSRYYNRIHHTKHFDDRETECKFSHNISRNANQHRCASSFANIGFDFDVAGDCGEIFNTLVDGPDFGEIYSTKRSDILNEEPDWLFPESCIKSCKRPNKNKGKRDQFRNSTLEENPERSRRSFSAPPFHRSKRKFFSLNHPSETIAKRQIGQVSNPNHQEASNFKYPQQSPIPLHQGTKDLLLQEFKINVKQTSDVLGDMQVNDITEIDGFGSSNIQNSAPFGELISKDVQDSIDYGTKWRNCSPKITKNDKLTNIQSQNNILDISSGFLHLAGDSLIPDIISKKCLKDAKVLHQVDKKFIPVVAGRTLAVIDQHAADERIRLEELRQKVLSGEAKMITYLDAEQELVLPEIGFQLLHSYSEQIKDWGWICNIHGQNSESFRRNLDILNRPQMAITLIAVPCILGVKLNDVDLLEFLQQLADTDGSSTMPPSVIRVLNLKACRGAIMFGDSLLPSECSLLVEELKHTSLCFQCAHGRPTTVPLVNLEALHNQIAKLRLMNEGSSDEWHGLHRHKVCLERAAQRLNSATGI 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1119 1194 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 118 - -
Aed11g1119 1194 Gene3D - 2 208 IPR036890 -
Aed11g1119 1194 Gene3D - 959 1147 IPR042120 -
Aed11g1119 1194 Pfam DNA mismatch repair protein, C-terminal domain 218 333 IPR013507 GO:0005524|GO:0006298|GO:0030983
Aed11g1119 1194 SMART DNA_mis_repair_2 214 335 IPR013507 GO:0005524|GO:0006298|GO:0030983
Aed11g1119 1194 SUPERFAMILY Ribosomal protein S5 domain 2-like 199 335 IPR020568 -
Aed11g1119 1194 Coils Coil 1150 1170 - -
Aed11g1119 1194 MobiDBLite consensus disorder prediction 767 788 - -
Aed11g1119 1194 Gene3D - 1000 1111 IPR042121 -
Aed11g1119 1194 SUPERFAMILY DNA mismatch repair protein MutL 954 1147 IPR037198 -
Aed11g1119 1194 Gene3D - 218 341 IPR014721 -
Aed11g1119 1194 MobiDBLite consensus disorder prediction 761 791 - -
Aed11g1119 1194 SMART MutL_C_2 956 1116 IPR014790 GO:0005524|GO:0006298
Aed11g1119 1194 Pfam MutL C terminal dimerisation domain 955 1116 IPR014790 GO:0005524|GO:0006298
Aed11g1119 1194 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 23 201 IPR036890 -
Aed11g1119 1194 CDD HATPase_MutL-MLH-PMS-like 11 198 - -
Aed11g1119 1194 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Aed11g1119 1194 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1152 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Aed11g1119 1194 PANTHER DNA MISMATCH REPAIR PROTEIN MLH3-RELATED 1 1152 IPR028830 GO:0006298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1119 Aed-Chr11 16751590 16760928 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1119 K08739 - gmx:100788019 2126.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1119 11 16751590 16760928 Aed11g1119 11 16751590 16760928 ECH