Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1089 ATGGTACTCATCACTGCACCGTTGCCAACAGTACCAACCCACCACCTATTCTTCGACGAAAACGTTGATTTAAAGAACAACAACCTACGTAATTTGTCTTCTCCCTACCATCAACTTGAGCTTCGACCACCTTTGCGCCACCCCATTCACAGCATCCCTTCTCACCCTTCCCCACAACCATTTATTCCTCAAACAACTACTTTCACGAAGAAGAAAAAGAAGAAGAGAAAATGGGCCACAACCTCTGACATATTGCACTTGATGGAAGCTCTACCATTTCCCGTACCCATTGACATCTACACCTCTCTCATAAAAGAGTGCACTTTTTCCGGTGACCCAGAAACCGCCATTGAGTTGTCTACGCATATCTCCAGGAGCGGCATCAGACCCCCCTTGCCTTTCCTCAATCGGATTCTCATCATGCTCGTGTCGTGTGGTTTGTTGGAAAATGCGCGCCAAGTGTTTGATAAAATGCGTGTGAGGGACTTCAACTCTTGGGCAACCTTGTTCGTTGCTTACTATGATAGTGCCGATTACGAGGAGGCTACGGCTGTTTTCGTCGACATGTTAGGCCAATTGGGTATGCTGCAATTTCCTCCGTGGATATGGGCTTGCCTTCTCAGGGCTTGTGCATGCACTGAGAATGTCTCTTTAGGAATGCAAGTTCATGGATGGCTGTTGAAGTTGGGTACCATTGATCACGTGCTTCTCAGCAGCTCCTTGATCAACTTCTATGGGAGATTCACGTGCCTGGAAGATGCAAGTGTTGTCTTCAACGGGGTGTCGCGGCATGACTCATTGACTTGGACGGCTATAATCGTCAGCGGTTGCAGGGAAAGGCATTTCTCTGAGGTTTTTGTCGACTTCAGGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTTACGTTTTCAAGTGTTCTCAAGGCATGTGGCAAAATGCTGAATCAGGAGCGATGTGGTGAACAAGTTCATGCTGAAACCATCAAACTTGGGCTGGTCTCAGATCACTATGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGTGGGTTATTGAGAGATGCAAAATGGTTGTTTGAGATGAGCCGGGAGGAGAGAAAGGTTGATTTTTGGAATGCTATGCTTATGGGTTACATACAGAGTGGTCTCTACATTGAAGCTGTTAAGTTTCTGTATCAGATGCAGGAAGCTGGAATGCAGCCCCGGGAATCTCTGCTTAAAAAATTAAGAGTTGCTTGTGGAAGTATTACCTACTCAAACATGAATTAA 1272 0.4623 MVLITAPLPTVPTHHLFFDENVDLKNNNLRNLSSPYHQLELRPPLRHPIHSIPSHPSPQPFIPQTTTFTKKKKKKRKWATTSDILHLMEALPFPVPIDIYTSLIKECTFSGDPETAIELSTHISRSGIRPPLPFLNRILIMLVSCGLLENARQVFDKMRVRDFNSWATLFVAYYDSADYEEATAVFVDMLGQLGMLQFPPWIWACLLRACACTENVSLGMQVHGWLLKLGTIDHVLLSSSLINFYGRFTCLEDASVVFNGVSRHDSLTWTAIIVSGCRERHFSEVFVDFREMGMRGVKKDCFTFSSVLKACGKMLNQERCGEQVHAETIKLGLVSDHYVQCSLIAMYGRCGLLRDAKWLFEMSREERKVDFWNAMLMGYIQSGLYIEAVKFLYQMQEAGMQPRESLLKKLRVACGSITYSNMN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1089 423 PANTHER PPR REPEAT PROTEIN 71 417 - -
Aed11g1089 423 Gene3D Tetratricopeptide repeat domain 320 418 IPR011990 GO:0005515
Aed11g1089 423 TIGRFAM PPR: pentatricopeptide repeat domain 372 402 IPR002885 -
Aed11g1089 423 Pfam PPR repeat 372 399 IPR002885 -
Aed11g1089 423 Pfam PPR repeat 342 365 IPR002885 -
Aed11g1089 423 Pfam PPR repeat 138 162 IPR002885 -
Aed11g1089 423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Aed11g1089 423 Pfam PPR repeat family 265 312 IPR002885 -
Aed11g1089 423 Gene3D Tetratricopeptide repeat domain 68 194 IPR011990 GO:0005515
Aed11g1089 423 Gene3D Tetratricopeptide repeat domain 195 319 IPR011990 GO:0005515
Aed11g1089 423 PANTHER OS07G0578800 PROTEIN-RELATED 71 417 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1089 Aed-Chr11 16533787 16535058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1089 94 418 Glycoside Hydrolase AT3G49170 28.571 2.56e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1089 - - gmx:100778405 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1089 11 16533787 16535058 Aed11g1089 11 16533787 16535058 ECH