Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1080 ATGGCACCAGCTAGGGTTTTCGGGGCAATCGCCGGCAGAGCGTTCATGGCGGCGGCGGCGAAGAGTGCGGCAAAGAAGAAAGCCGCTCCGGCCGGCGCAGCAGCTGCGAAAGCCACCGTGAAGAAGGTGGCCGCGCCTAGGACCGCGAACTCCGGCATACAGAAGGTGGTTCCGGTTTCTTCCCAGCTCGGAGACTTCCTCGGCGCTCCTCAAGTGTCGCGAACCGAAGCCGTCAAAAAAGTCTGGGCCTACATCAAGCTTCAGAATCTTCAGAATCCATCAAATAAGAAGGAGATCTTTTGTGATGACAAGCTGAAGACCATTTTTGAGGGGAAGGAGAAGGTTGGGTTCACAGAGATTGCTAAATTGCTGTCTAACCATTTTGCGAAATCAGGCTGA 399 0.5464 MAPARVFGAIAGRAFMAAAAKSAAKKKAAPAGAAAAKATVKKVAAPRTANSGIQKVVPVSSQLGDFLGAPQVSRTEAVKKVWAYIKLQNLQNPSNKKEIFCDDKLKTIFEGKEKVGFTEIAKLLSNHFAKSG 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1080 132 PANTHER PROTEIN TRI1 4 131 - -
Aed11g1080 132 SUPERFAMILY SWIB/MDM2 domain 48 130 IPR036885 -
Aed11g1080 132 Pfam SWIB/MDM2 domain 57 128 IPR003121 -
Aed11g1080 132 SMART swib_2 53 132 IPR019835 -
Aed11g1080 132 CDD SWIB-MDM2_like 57 128 - -
Aed11g1080 132 Gene3D SWIB/MDM2 domain 47 132 IPR036885 -
Aed11g1080 132 ProSiteProfiles SWIB/MDM2 domain profile. 52 130 IPR003121 -
Aed11g1080 132 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 4 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1080 Aed-Chr11 16461826 16464108 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aed11g1080 SWIB 5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1080 - K15223 gmx:100779127 181.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1080 11 16461826 16464108 Aed11g1080 11 16461826 16464108 ECH