Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1075 ATGAAAACATGGGTAGTTTTCCAATTGCTGCTTAAGCATGTTACAAGATTGGCCAATGAAAATTTAACCTTGTTTGGACCTAGAGTATCACCATCATCCCATTCAATTTCTAAACAGAACTATCAAAATGGGAACTTCAGCATTGTTAAGCAACACAGGGTTCTCATTCCTCCATATCCTCCTGGAATGTTATCATGTTGTCATCGTTTTTGCAGCGTCGTTCAACTGTTTGAGGAAATGCCACAAAGGCATCTACATACGAGAGGCATCCATTTTGAGCTTGTTGATTACATCAAATTGTGCCTCAAAAAACCCAAAATTATGACTGCCACTGTTGCCCATTGTTCAGCCTTAAAGCTAGGTGCTCTAGCTCACCTCCCCATTTCAACATCTCTACTCACTGCTTATTCTAAGGCTGGAGACTTTACCTCTTCAAAGGGTATGTTTGATGAGATTCACAGTAGAGATGTGATTGCTTGGAATGCTATTGTTGCAGCATCTCTTGAAAATAAGTGTTATAGTATAGCAATGAACTTCTTTGATAAAATGATCAAGGCCCAAACTGGGTTTGATTCCACTACTCTATTGCTTATTGTATCAGCTTCCTTAGATGTGAACAGCTTTGATCAAGGACGAGCAATTCATTGTGTGAGTATAAAATCTGGGATGCTTGTGGATATCAGTTTAGGAAATGCTCTTATTGACATGTACGCTAAGTGTGGCGATCTAAGCTCTTCTGAGTGTCTATATGAAGAGATGGTATGTAAAGACGTAGTTTCATGGAATTCAATAATGAGAGGCAGTCTTTACAACAGTGATCCAGAGAAAGCATTGTGTTACTTCAAAAGGATGAGCTTTTCTGAAGATACAGCAGACAATGTCAGTCTATCTTGTGCCATTTCTGCATCTTCAAGTTTGGGAGAGCTGGCTTTTGGACGGTCCATTCACGGGCTTGGAATCAAGCTAGGTTACAAGGACAGCTCGCATGTTTCAGTTGCCAACTCGCTCATTTCATTATATTCACAATGTGAAGACATCAAGGCTGGTGAAACAGTATTCAGAGAAATAGCACTTAGAGATATTGTTTCCTGGAATGCAATGATGGAAGGATTTGCTTCAAATGGAAAGATTAATGAAGTATTTGATCTTCTGGTTGAAATGCAAACAGTAGGGTCTTTTCAGCCTGATATAGTGACATTAACTACCATACTTCCACTTTGTGCTGAACTGATGCTCTCCATAGAAGGAAGAGCCATTCATGGATTTGCAATTCGAAGACAAATGGTACCTGATCATGTTATGTTACTGAACAGCCTGATAGACATGTATTCAAAGTGCAACCTTGTGGAGAAAGCTGAGCTCTTGTTCAATTCTACCGCTAAGAAAGACTCAGTCTCATGGAATGCAATGATATCTGGCTATTCCCACAACGGGTATTCTGATGAAGCTCAAAATTTGTTCAGAAAGATGCTACGTAGTGGTCCAAATTGCAGCTCATCAACCGTTTTTGCTATTCTTTCTTCCTGCAACTCCCTTAATAGTATCCGATTTGGAAAATCAGTTCACTGCTGGCAGTTGAAATCTGGATTTTTGAACCACGTTCTTTTAATAAATACTCTCATTCACATGTATATCAATTGTGGGGACCTGACATCCAGTTTCTCAATTTTGCATGAGAATTCTGCTTTAGCAGATATAGCTTCATGGAACACACTAATTGTGGGGTGTGTACGATGTGACCATTTTAGAGAGGCTCTGGAGACTTTCAAGTTCATGAGACAGGAAACTCCTTTAAACTATGACTCTATAACCTTTGTAAGTGTCTTGTCTGCCTGTGCAAACCTGGAACTATTCAACCTAGGAAAGTCTCTCCACAGCCTTGCACTTAAGTCTCTTTTGGGATCAGATACTCGGGTTCAAAACTCGCTAATTACCATGTATGACAGATGCAGGGACATCAACAGTGCCAGAGTAGTGTTTAAATTCTTCTCTACTCCCAATTTATGCTCATGGAATTGCATGATCTCAGCTTTATCTCATAATAGAGAAAGTAGAGAAGCATTGGAACTATTTCGCTGCCTCCAGTTTGAACCAAATGAGATCACCATTATTAGTGTTCTCTCAGCTTGCACTCAAATTGGTATCCTAAGACATGGAAAACAAGTTCATGCCCATGTGTTCAGGACTGGCATTCAAGACAATTCTTTCATATCAGCAGCTCTTATAGATTTGTATAGTAACTGTGGACGATTGGACACTGCCCTCCAAGTATTCAGACATGCAAAAGAGAAGTCAGAATCAGCTTGGAATTCAATGATTTCTGCATATGGATACCATGGAAAGGGTGAGAAAGCAATCAAACTCTTTCATGAGATGTATGAGTCAGGAGCAAGAGTGAGCAAAAGCACTTTTGTTAGCCTTTTATCAGCATGCAGCCACTCAGGACTTGTGAACCAAGGCCTTTGGTTCTATGAGTGTATGTTGGAGAAATATGGAGTACAACCTGAGACTGAGCATCAAGTTTATGTAGTTGACATGCTAGGAAGATCAGGTAGACTAGATGAGGCTTATGAGTTTGTTAAGGGGTGTGACAGCTCTGGTGTGTGGGGAACCCTCCTAAGTGCATGCAACTATCATGGAGAACTCAAGTTGGGGAAACAAATTGCTCAACGTCTCTTTCAACTTGAACCTCAAAATGTTGGATATTACATATCATTGTCAAATATGTATGTTGCTGCTGGAAGCTGGAAAGATGCTACCGAGTTGAGACAATCTATTCAGGACCTAGGATTAAGAAAAACTGCAGGTTATAGTCTTGTTGATGTTGATTTGTGA 2835 0.4004 MKTWVVFQLLLKHVTRLANENLTLFGPRVSPSSHSISKQNYQNGNFSIVKQHRVLIPPYPPGMLSCCHRFCSVVQLFEEMPQRHLHTRGIHFELVDYIKLCLKKPKIMTATVAHCSALKLGALAHLPISTSLLTAYSKAGDFTSSKGMFDEIHSRDVIAWNAIVAASLENKCYSIAMNFFDKMIKAQTGFDSTTLLLIVSASLDVNSFDQGRAIHCVSIKSGMLVDISLGNALIDMYAKCGDLSSSECLYEEMVCKDVVSWNSIMRGSLYNSDPEKALCYFKRMSFSEDTADNVSLSCAISASSSLGELAFGRSIHGLGIKLGYKDSSHVSVANSLISLYSQCEDIKAGETVFREIALRDIVSWNAMMEGFASNGKINEVFDLLVEMQTVGSFQPDIVTLTTILPLCAELMLSIEGRAIHGFAIRRQMVPDHVMLLNSLIDMYSKCNLVEKAELLFNSTAKKDSVSWNAMISGYSHNGYSDEAQNLFRKMLRSGPNCSSSTVFAILSSCNSLNSIRFGKSVHCWQLKSGFLNHVLLINTLIHMYINCGDLTSSFSILHENSALADIASWNTLIVGCVRCDHFREALETFKFMRQETPLNYDSITFVSVLSACANLELFNLGKSLHSLALKSLLGSDTRVQNSLITMYDRCRDINSARVVFKFFSTPNLCSWNCMISALSHNRESREALELFRCLQFEPNEITIISVLSACTQIGILRHGKQVHAHVFRTGIQDNSFISAALIDLYSNCGRLDTALQVFRHAKEKSESAWNSMISAYGYHGKGEKAIKLFHEMYESGARVSKSTFVSLLSACSHSGLVNQGLWFYECMLEKYGVQPETEHQVYVVDMLGRSGRLDEAYEFVKGCDSSGVWGTLLSACNYHGELKLGKQIAQRLFQLEPQNVGYYISLSNMYVAAGSWKDATELRQSIQDLGLRKTAGYSLVDVDL 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1075 944 PANTHER BNACNNG07920D PROTEIN 416 613 - -
Aed11g1075 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Aed11g1075 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Aed11g1075 944 PANTHER BNACNNG07920D PROTEIN 563 942 - -
Aed11g1075 944 PANTHER BNACNNG07920D PROTEIN 476 691 - -
Aed11g1075 944 Pfam E motif 879 940 IPR046848 -
Aed11g1075 944 Gene3D Tetratricopeptide repeat domain 416 518 IPR011990 GO:0005515
Aed11g1075 944 Gene3D Tetratricopeptide repeat domain 323 415 IPR011990 GO:0005515
Aed11g1075 944 Gene3D Tetratricopeptide repeat domain 87 209 IPR011990 GO:0005515
Aed11g1075 944 Gene3D Tetratricopeptide repeat domain 618 718 IPR011990 GO:0005515
Aed11g1075 944 Gene3D Tetratricopeptide repeat domain 519 617 IPR011990 GO:0005515
Aed11g1075 944 Gene3D Tetratricopeptide repeat domain 210 312 IPR011990 GO:0005515
Aed11g1075 944 Pfam PPR repeat 670 694 IPR002885 -
Aed11g1075 944 Pfam PPR repeat 437 457 IPR002885 -
Aed11g1075 944 Pfam PPR repeat 568 594 IPR002885 -
Aed11g1075 944 Pfam PPR repeat 259 284 IPR002885 -
Aed11g1075 944 Pfam PPR repeat 231 257 IPR002885 -
Aed11g1075 944 Pfam PPR repeat 740 764 IPR002885 -
Aed11g1075 944 Pfam PPR repeat 130 156 IPR002885 -
Aed11g1075 944 Pfam PPR repeat 465 494 IPR002885 -
Aed11g1075 944 PANTHER - 256 509 - -
Aed11g1075 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 765 799 IPR002885 -
Aed11g1075 944 PANTHER - 416 613 - -
Aed11g1075 944 SUPERFAMILY TPR-like 429 928 IPR011990 GO:0005515
Aed11g1075 944 Pfam PPR repeat family 360 405 IPR002885 -
Aed11g1075 944 Pfam PPR repeat family 767 812 IPR002885 -
Aed11g1075 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Aed11g1075 944 Gene3D Tetratricopeptide repeat domain 738 936 IPR011990 GO:0005515
Aed11g1075 944 PANTHER BNACNNG07920D PROTEIN 256 509 - -
Aed11g1075 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 595 IPR002885 -
Aed11g1075 944 PANTHER - 71 284 - -
Aed11g1075 944 PANTHER BNACNNG07920D PROTEIN 71 284 - -
Aed11g1075 944 TIGRFAM PPR: pentatricopeptide repeat domain 768 796 IPR002885 -
Aed11g1075 944 TIGRFAM PPR: pentatricopeptide repeat domain 670 692 IPR002885 -
Aed11g1075 944 TIGRFAM PPR: pentatricopeptide repeat domain 465 494 IPR002885 -
Aed11g1075 944 TIGRFAM PPR: pentatricopeptide repeat domain 362 396 IPR002885 -
Aed11g1075 944 TIGRFAM PPR: pentatricopeptide repeat domain 568 594 IPR002885 -
Aed11g1075 944 PANTHER - 563 942 - -
Aed11g1075 944 PANTHER - 476 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1075 Aed-Chr11 16434997 16437831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1075 292 942 Glycoside Hydrolase AT3G49170 31.138 1.27e-103 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1075 - - gmx:100775736 1685.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1075 11 16434997 16437831 Aed11g1075 11 16434997 16437831 ECH