Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1039 ATGGAGAATAACGAGATACTAGAGGAGCTTCTCAACATCGAGATAATTAATGCCATTATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGCATTCCAGCTTATATGTTGACTTCAGTAAATAAGGAAGATGAAAAGTTCATATACAAGGCTTTGGAGAAGGGAGAGGGGGAACTCAAAATATTGTATGTCACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTGATTTCAATTGATGAAGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACAGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTACATATTCCTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAACTTATTTTATATGGTTAAGGAAAAGTCATCTGTTGGGAAGGTAGTCATTGATGAAATTGCAAATTTCATTCAAGAATCTTATCCAAATAAGGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTGAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCAGACGTGGATGTAAATGCTCGGGAAAAAGTTCACATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGCTACAGTAGCTTTTGGCATGGGAATCAACAAACCAGATGTTTGCTGGAGATTAAAAACATTGTATCTTCAGCTCAGACATAGTGTTTCATTGGATATTGAGAGCTCGATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATAGTACGATATTGTCAGGCTTTATATACTCTTTATGATACAGGGATGTGCGACATCTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCTGGTCATGCAAAACTGATGGTTTCATTGTTGCAAGATATGCAAGCAAATGATCAAAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAGTTGAAACGAGAGGAAACTGAGCAGCTCATCTTACACCTTTTACTGCAGCGGTTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCCACAAATGCTTACATTGCTGTGGGGCCGTTGGCCAAGCAAATATTGCAAGGGAAGAAATCTGTAAAACTTGAGATTTATGCTGAACAGAGTACTAAAGCTGGTGTAAGACCAGTGAAACGCTGCCTTGGGTCCTCTGGCTTGGAGTTAAAGCTTGATGAGCTGAGAAAAGAACTATCCTCTGCTCATGGAGGAATACTCCCACACACTGTCTTATCCACTGAACAAATCATCTTATTAACTTCTCAAAAACCAAGCTCACTGGAACAGGCAAGTTTTAAGCTATGTAATTTACTGGAGAAAGTGATTGGAAAATTGAAGACAAAAAAGTATGGAAATAGAATACTTGAGCAAATTGAAAAGTATTCTGACTTCAACCCGGCTGATGAACAAGAAACTGACGGTAGGGCTGCAAAGAAGTCAAAGACTAAGAAAAATCTTGTTCTTATTGAAAGTAGTGAAGATGAAGATTGA 1776 0.397 MENNEILEELLNIEIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSVNKEDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPNVPMVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIANFIQESYPNKESGIVYCFSRKECEQVAKELRERGISADYYHADVDVNAREKVHMRWSNNKLQVIVATVAFGMGINKPDVCWRLKTLYLQLRHSVSLDIESSMVFYENSGLQNLYDIVRYCQALYTLYDTGMCDICAFSSEVKEVDVSGHAKLMVSLLQDMQANDQRSTMLQLVDKMKIKQKELGSELKREETEQLILHLLLQRFLKEEFQHTAYATNAYIAVGPLAKQILQGKKSVKLEIYAEQSTKAGVRPVKRCLGSSGLELKLDELRKELSSAHGGILPHTVLSTEQIILLTSQKPSSLEQASFKLCNLLEKVIGKLKTKKYGNRILEQIEKYSDFNPADEQETDGRAAKKSKTKKNLVLIESSEDED 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1039 591 PANTHER ATP-DEPENDENT DNA HELICASE Q1 13 570 - -
Aed11g1039 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 215 381 IPR001650 -
Aed11g1039 591 SMART helicmild6 244 313 IPR001650 -
Aed11g1039 591 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 13 401 IPR004589 GO:0004386|GO:0006310
Aed11g1039 591 Gene3D - 8 197 IPR027417 -
Aed11g1039 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 16 190 IPR014001 -
Aed11g1039 591 Gene3D HRDC domain 480 558 IPR044876 -
Aed11g1039 591 Pfam DEAD/DEAH box helicase 14 177 IPR011545 GO:0003676|GO:0005524
Aed11g1039 591 SMART RQC_2 365 462 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aed11g1039 591 Coils Coil 393 413 - -
Aed11g1039 591 SMART ultradead3 2 206 IPR014001 -
Aed11g1039 591 CDD DEXHc_RecQ1 11 197 - -
Aed11g1039 591 PANTHER DNA HELICASE RECQ FAMILY MEMBER 13 570 - -
Aed11g1039 591 Pfam Helicase conserved C-terminal domain 220 299 IPR001650 -
Aed11g1039 591 Gene3D - 198 322 IPR027417 -
Aed11g1039 591 Gene3D - 361 461 IPR036388 -
Aed11g1039 591 Pfam RQC domain 362 466 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aed11g1039 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 300 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1039 Aed-Chr11 16197501 16205834 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1039 K10899 - gmx:100817635 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1039 11 16197501 16205834 Aed11g1039 11 16197501 16205834 ECH