Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1013 ATGCCGAAGCACAGTGACTTGCAAATCAACATCAATGATGAGGAAATATTCCTTTTGGACAAGAAGTTCATATCAAAATACTGTGGAAGACTGAAGAAAATCTTGAGCCATGAGAAGAGAAATTGCCACAGCAGCAAGACCTTGAGCATTGAAATCAATGATTTCCCTGGAGGGCCACAAGGGTTTGAGCTTGTTTCAAGATTCTGCTACAACAATGGCAAAATCCCTATCAATGTGTCCAATGTGCTTATCCTCCATTGCTGTGCCATTTATCTTGGAATGACTGAAGAGGTCTTCACCAACAATCTCATGCAACAAATAGAAGCCTTTCTTGAAGGAATCCACTATTGGACATGGAATGAAGTACTTGTAAGTCTCAAGAATTGTGATTGTGAGCTATTCTATCCATTTGCAAATAGCTGTGGTCTATTAGAGAAGATTATTGGTGCACTCATAGCAAAAATGGATCAAAACTCTGAGGCAAACCTCTTCACATCTTCATCTTCATCATCACCATCATCTCCTGAGAGCAATTCAGCCAAGAGATTTTCATTTTCATATTCAACACAAGTTACTACTCCCAAGACTGTGAAGTCAAATTTGCCTAACAAAGCATGGTGGTTTGAGGATTTGGCTACTTTACCACCAAAGATCATTGAGAAGATTCTCCATACTATTGGAGCTTACAAAACAAATAACAACAACTCAACCATCACAAGATTTCTGCTTCATTATCTGAAAATAGTGACGCCGCCAAGAGAGGCTAATTGCAACAACAGTGTTGAGTATGCTGGTCTAGCAGAAACAGCTGGTCATGGAATCATGTTTGTTGGTAACAAGAAATTTTCTTGTAGAGGCCTTTTTTGGATATTAAGGATTGTGTCAAGGTTTGGGATGAGTAGAGATTGCAGAATTGAAATTGAGAAATTGATTGGTGGGGTGCTTGAGCAAGCAACATTGGATGATCTACTAGTCTCTGGGCATCATATGGGACTTTATTATGATGTAACATTTGTGATAAGGTTGATCAAACAATTTGTTGATATAAATGACTCTGATGGGGTGGTGTGTGTACAGAAGTTTAAAAAAGTTGGTAGATTAGTTGACAAGTATCTGATAGAGATATCCCCTGATAAGAACCTCAAGGTCACTAAATTTCTTGCAGTTGCAGAATGTTTGCCAGATTGTGCTAGGGATTGCTTTGATGGGGTATACAGAGCCATTGACATCTATCTTCAGTCTCATCCAATGCTGGCATTTGAGGAGAGGTCAAGATTGTGTAGATGTCTTAATTACAATAAACTAAGCTTTGAAGCTTGTAAAGATCTTGCAAAGAACCCCAGAATACCTCCAATGATTGCAATGCGGGCTCTTATTTCTCAACAAACCAACATTCCATCAAGTGACTACTTAGCCATTGAGGAAAGTGAAATCATGAACCCTTCCCAAATCATTAATTTGCACTATGACAACACAGATAGCTTCTTGGAAGAGAAAGAAGATATGAGACAAAATCTTGAGAGAATGGAACGGAGAGTAAAGGAATTGGAGATGTTGTGCAAGGAAATGAAGGTTCAGATGTCAAGGTTTCACTAG 1596 0.3878 MPKHSDLQININDEEIFLLDKKFISKYCGRLKKILSHEKRNCHSSKTLSIEINDFPGGPQGFELVSRFCYNNGKIPINVSNVLILHCCAIYLGMTEEVFTNNLMQQIEAFLEGIHYWTWNEVLVSLKNCDCELFYPFANSCGLLEKIIGALIAKMDQNSEANLFTSSSSSSPSSPESNSAKRFSFSYSTQVTTPKTVKSNLPNKAWWFEDLATLPPKIIEKILHTIGAYKTNNNNSTITRFLLHYLKIVTPPREANCNNSVEYAGLAETAGHGIMFVGNKKFSCRGLFWILRIVSRFGMSRDCRIEIEKLIGGVLEQATLDDLLVSGHHMGLYYDVTFVIRLIKQFVDINDSDGVVCVQKFKKVGRLVDKYLIEISPDKNLKVTKFLAVAECLPDCARDCFDGVYRAIDIYLQSHPMLAFEERSRLCRCLNYNKLSFEACKDLAKNPRIPPMIAMRALISQQTNIPSSDYLAIEESEIMNPSQIINLHYDNTDSFLEEKEDMRQNLERMERRVKELEMLCKEMKVQMSRFH 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1013 531 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 2 523 - -
Aed11g1013 531 Pfam NPH3 family 206 440 IPR027356 -
Aed11g1013 531 ProSiteProfiles NPH3 domain profile. 205 464 IPR027356 -
Aed11g1013 531 SUPERFAMILY POZ domain 3 96 IPR011333 -
Aed11g1013 531 Coils Coil 492 531 - -
Aed11g1013 531 PANTHER OS12G0117600 PROTEIN 2 523 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1013 Aed-Chr11 15964877 15967223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1013 5 529 EF-hand Containing Proteins AT3G44820 23.826 1.31e-47 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1013 - - gmx:100785736 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1013 11 15964877 15967223 Aed11g1013 11 15964877 15967223 ECH