Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0331 ATGAGTTCCTCTGGTGGAGGGTACGCTGTAGAGGTTACGGGTCTCTCGCCAAAAGCCACCGACAAGGATGTCCGTGACTTCTTTGCTTTCTCCGGTGTCATTGAGAATGTTGAAATTATCAGGTCAGGTGATTATGCTTGTACTGCTTATGTGACATTCAAAGATGCATATGCTCAAGAAACTGCATGCTTGCTCAGTACACCACACAATAGTCAATTTGTTTCCTCTGCTGGAGAAGCGGTTACCATGGCTCAAGAAGTGGTTAAGACCATGCTGGCAAAGGGATATGTCCTCAGCAAGGATGCTCTAGCTCAGGCTAAAGACTTTGACGAGTCTCATCAGGTTTACGCCACTGCAACGGCGAAGGTCTCCGAACTGAGCCAGAGAATTGGCCTCTCTGATAAGATATCTGCAGGTATTGGAGCTGTTAAATCTGTGGATCAGAGATATAATGTCACTGAAACAACGAAGGCGGCCGCATCCACCGCGGGAAGATCAGTAGCGGCGGCTGCAAACTCTTTGGTAAATAGCAGCTATTTTTCACAAGGAGCCTTGTGGGTGTCAGGTGCTCTAACCAGAGCAGCTCAAGCTGCTTCTGATTTGGGTACACGCAGGGATAGGCAGTAA 627 0.4817 MSSSGGGYAVEVTGLSPKATDKDVRDFFAFSGVIENVEIIRSGDYACTAYVTFKDAYAQETACLLSTPHNSQFVSSAGEAVTMAQEVVKTMLAKGYVLSKDALAQAKDFDESHQVYATATAKVSELSQRIGLSDKISAGIGAVKSVDQRYNVTETTKAAASTAGRSVAAAANSLVNSSYFSQGALWVSGALTRAAQAASDLGTRRDRQ 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0331 208 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 68 208 - -
Aed11g0331 208 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 5 66 - -
Aed11g0331 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 62 IPR000504 GO:0003723
Aed11g0331 208 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 66 - -
Aed11g0331 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Aed11g0331 208 Gene3D - 3 89 IPR012677 -
Aed11g0331 208 SUPERFAMILY RNA-binding domain, RBD 9 64 IPR035979 GO:0003676
Aed11g0331 208 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 68 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0331 Aed-Chr11 2707525 2710978 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0331 - - gmx:100805907 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0331 11 2707525 2710978 Aed11g0331 11 2707525 2710978 ECH