Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0322 ATGTCCACTTCTGCAAGGAAGAGACTCATGAGAGATTTTAAAAGATTGCAACTTGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAGGACAATAATATCATGCTTTGGAATGCAGTTATCTTTGGACCAGATGACACCGCTTGGGATGGAGGCACATTTAAGTTAACACTTCAGTTCACTGAGGATTATCCTAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACATTTATGCAGATGGAAGCATATGCTTGGACATTTTACAAAATCAATGGAGCCCAATTTATGATGTAGCTGCCATACTTACCTCAATTCAGGTCATAGTGATTCTCTATATCTTGAGCTTGCTTTGTGATCCAAACCCAAACTCTCCAGCGAATTCAGAAGCTGCTCGGATGTTTAGTGAAAACAAACGTGAATACAACAGAAGAGTACGAGATATTGTTGAGCAGAGTTGGACTGCTGATTAA 483 0.4099 MSTSARKRLMRDFKRLQLDPPAGISGAPQDNNIMLWNAVIFGPDDTAWDGGTFKLTLQFTEDYPNKPPTVRFVSQMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVIVILYILSLLCDPNPNSPANSEAARMFSENKREYNRRVRDIVEQSWTAD 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0322 160 SUPERFAMILY UBC-like 1 158 IPR016135 -
Aed11g0322 160 Pfam Ubiquitin-conjugating enzyme 8 152 IPR000608 -
Aed11g0322 160 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Aed11g0322 160 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 160 - -
Aed11g0322 160 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 160 - -
Aed11g0322 160 CDD UBCc 7 153 IPR000608 -
Aed11g0322 160 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Aed11g0322 160 SMART ubc_7 7 158 - -
Aed11g0322 160 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 158 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0322 Aed-Chr11 2598722 2602069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0322 7 128 Miscellaneous Gene Families AT1G17280 29.134 9.32e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0322 K10573 - gmx:100499775 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0322 11 2598722 2602069 Aed11g0322 11 2598722 2602069 ECH
Aed11g0322 11 2598722 2602069 Aed6g1555 6 19666111 19668982 PCT