Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0321 ATGAGGAGAGATCACATAACGTTAGCAAAACTCGTATCTGATGGCTTCTACAAAGAAGCACTCTCCCTCTTCTCCCACCTCCACTCTTCTTCTTCTTCCCCCACTCTTCACTCCTTCACCTTCCCCACTCTCTTCAAAGCATGCACCAACCTCCAAACCCAAACCCAAACCCTCCATGCTCTTCTCATTAAAACCGGGTTCCACTCCGACCCTTATGCTTCCTCCGCCCTCACCGCCGCTTACGCTGTGAATCCTCGCCATTTTCTCGACGCACTCAAGGTGTTCGATGAAATGCCCCAACCAAACGTCGCCTCTCTCAACGCTGCTCTTTCGGGTTTCTCGCGAAACGGGCGTCGCGGAGAAGCTCTCCGGGTGTTCCGGCGAGCTGGGTTGGGTCCCTTGAGGCCCAACTCGGTCACCGTCGCGTGCATGCTCGGTGTTCCTCATGTGGGTGCCAACTACGTTGAGCTGATGCATTGCTGCGCGTTGAAGTTAGGAGTTGAATTTGATGCATATGTTGCCACCTCGCTTGTGACTGCGTATTCTAAATGTGAGGAGTTGGTTTCGGCGACCAAGGTGTTTGGGGAATTGCCTGTGAAGAGTGTGGTGAGTTACAACGCTTTCATTTCGGGTTTGTTGCAGAATGGGGTTCCTGGTTTTGTATTGGATGTGTTTAAGGAGATGATGAGGGAAGAGTGTTTGGAGTGCAAAATCAATTCAGTGACGTTGGTGTCTGTTCTTTCTGCGTGTGGTAGTCTACAAAATGTTCGTTTTGGGAGGCAGGTTCATGGGCTTGTTGTGAAAATTGATGCAGATGATTGGGTTATGGTGGTGACTGCACTTGTGGATATGTATTCAAAGTGTGGTTTTTGGCATTCTGCTTTTGAGGTTTTCACAGGGGTGGAAGGGAATAGGAGAAATTTGATCACCTGGAATTCCATGATTGCGGGAATGATGTTCAATAAAGAGAGTGAGAGAGCTGTTGATATGTTTCGGAGCATGGAATCCGAAGGGTTGAAGCCTGATTCAGCCACTTGGAATTCCATGATTAATGGGTTTGCGCAACAAGGGGTGTGTGGGGAAGCTTTTAAGTACTTTAGGGAAATGCAATCTATTGGTGTGGCTCCGTGTTTGAAAATTGTTACTAGCCTTTTGTCAGCGTGTGCAGATTCATCTCAGTTACGACAAGGGGAAGAAATACATGGGTATGCTATTAGAACTGATATCAATAGGGATGATTTTTTGGCAACTGCTCTGGTTGATATGTACATGAAATGTGGGCATGCTTCTTGGGCACGAGGAGTTTTTGATCAGTTTGATGCAAAACCAGATGATCCGGCATTTTGGAATGCAATGATTGGTGGATATGGAAGAAATGGTGACCATGAGTCTGCGTTTCAAATCTTTGAGGAAATGCTGGAAGAAATGGTTCGACCAAACAGTGCAACATTTGTTAGTGTTTTATCTGCTTGCAGCCACACGGGTCAGGTTGATAGAGGATTACACGTTTTCAGAATGATGAGAAGAGAGTATGGCTTGCAGCCAAAGCCTGAGCATTTTGGTTGCATGGTTGATCTTTTAGGTCGGTCTGGTAGGTTGGTTGAAGCTCAAGACCTGGTGCAGGAATTAGCAGAGCCTCCTGCATCCGTTTTTGCTTCTTTGCTTGGTTCTTGTAGGTGTTACCTAGATTCCAATCTTGGGGAAGAAATGGCCAAGAAGCTTCTAGATATAGAACCAGAAGACCCAGCTCCTCTGGTGGTCTTGTCTAACATATATGCTGGGCTAGGAAGATGGAAGGAGGTAGAAAGAATAAGAGGGATGATCACGGATAAGGGACTGGGCAAACTCTCTGGCTTTAGCATGATAGAAGTTGCATGA 1878 0.4675 MRRDHITLAKLVSDGFYKEALSLFSHLHSSSSSPTLHSFTFPTLFKACTNLQTQTQTLHALLIKTGFHSDPYASSALTAAYAVNPRHFLDALKVFDEMPQPNVASLNAALSGFSRNGRRGEALRVFRRAGLGPLRPNSVTVACMLGVPHVGANYVELMHCCALKLGVEFDAYVATSLVTAYSKCEELVSATKVFGELPVKSVVSYNAFISGLLQNGVPGFVLDVFKEMMREECLECKINSVTLVSVLSACGSLQNVRFGRQVHGLVVKIDADDWVMVVTALVDMYSKCGFWHSAFEVFTGVEGNRRNLITWNSMIAGMMFNKESERAVDMFRSMESEGLKPDSATWNSMINGFAQQGVCGEAFKYFREMQSIGVAPCLKIVTSLLSACADSSQLRQGEEIHGYAIRTDINRDDFLATALVDMYMKCGHASWARGVFDQFDAKPDDPAFWNAMIGGYGRNGDHESAFQIFEEMLEEMVRPNSATFVSVLSACSHTGQVDRGLHVFRMMRREYGLQPKPEHFGCMVDLLGRSGRLVEAQDLVQELAEPPASVFASLLGSCRCYLDSNLGEEMAKKLLDIEPEDPAPLVVLSNIYAGLGRWKEVERIRGMITDKGLGKLSGFSMIEVA 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0321 625 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
Aed11g0321 625 TIGRFAM PPR: pentatricopeptide repeat domain 483 515 IPR002885 -
Aed11g0321 625 TIGRFAM PPR: pentatricopeptide repeat domain 345 371 IPR002885 -
Aed11g0321 625 TIGRFAM PPR: pentatricopeptide repeat domain 449 480 IPR002885 -
Aed11g0321 625 TIGRFAM PPR: pentatricopeptide repeat domain 203 233 IPR002885 -
Aed11g0321 625 Pfam E motif 561 623 IPR046848 -
Aed11g0321 625 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 9 620 - -
Aed11g0321 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Aed11g0321 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Aed11g0321 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Aed11g0321 625 Gene3D Tetratricopeptide repeat domain 5 154 IPR011990 GO:0005515
Aed11g0321 625 Gene3D Tetratricopeptide repeat domain 445 621 IPR011990 GO:0005515
Aed11g0321 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
Aed11g0321 625 Pfam PPR repeat 520 543 IPR002885 -
Aed11g0321 625 Pfam PPR repeat 105 128 IPR002885 -
Aed11g0321 625 Pfam PPR repeat 279 298 IPR002885 -
Aed11g0321 625 Pfam PPR repeat 203 233 IPR002885 -
Aed11g0321 625 Gene3D Tetratricopeptide repeat domain 155 263 IPR011990 GO:0005515
Aed11g0321 625 Gene3D Tetratricopeptide repeat domain 267 404 IPR011990 GO:0005515
Aed11g0321 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 510 IPR002885 -
Aed11g0321 625 PANTHER OS07G0578800 PROTEIN-RELATED 9 620 IPR045215 GO:0003723|GO:0009451
Aed11g0321 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Aed11g0321 625 Pfam PPR repeat family 307 354 IPR002885 -
Aed11g0321 625 Pfam PPR repeat family 448 492 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0321 Aed-Chr11 2595025 2596902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0321 37 624 Glycoside Hydrolase AT3G49170 29.716 5.48e-71 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0321 - - gmx:100809263 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0321 11 2595025 2596902 Aed11g0321 11 2595025 2596902 ECH