Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0259 ATGAGAACCCATTTTCACTATCTTCCATTACTTTTTGTGTTCACCCTTTCCCTTCTATTGGGCCAAAACCGACCCGACCCGGACCCGCTTCAAGACTATTGTGTTGCAGATACCAAAGGTGAATTTTTCATCAATGGGGTGCCTTGCATTAACCCGGATAAGGTTTCCTCATCCCATTTTGTCACATCTGCTTTATCCAAAGCTGGCAACACTAGTAGCAACCTAATGGGCTTCAGTGTTACAGCCACCAACACTGCTAATCTTCCTGGGCTTAACACATTGGGCCTAGTGTTGGCCCGGGTCGACATAGAGGGCAACGGGATCGTGCCACCTCACTCGCACCCACGGGCCTCGGAGGTGACCACTTGCCTCGTGGGGCGGATTCTAGTGGGCTTTGTTGACACAAGTAACCGTGTGTTTACCCAGAACCTGAGGCCAGGTGAGTCATTTGTGTTCCCAAAGGGCCTGATCCACTTCTTGTACAATAGTGACTCAAGGGACTCAGCACTAGCCATATCGGGCCTCAATAGCCAGAATCCAGGTACACAAATTTCATCACTTGCAACATTTGCTACCAAGCCTCCTATTCCTGATGAAATTCTTAAGAAGGCTTTTCAAATTTCCAAAGCAGAAGTGGAAACTATTCGTAGAAACCTTGGAGGATGA 666 0.4805 MRTHFHYLPLLFVFTLSLLLGQNRPDPDPLQDYCVADTKGEFFINGVPCINPDKVSSSHFVTSALSKAGNTSSNLMGFSVTATNTANLPGLNTLGLVLARVDIEGNGIVPPHSHPRASEVTTCLVGRILVGFVDTSNRVFTQNLRPGESFVFPKGLIHFLYNSDSRDSALAISGLNSQNPGTQISSLATFATKPPIPDEILKKAFQISKAEVETIRRNLGG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0259 221 Pfam Cupin 65 212 IPR006045 -
Aed11g0259 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 11 220 - -
Aed11g0259 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 11 220 - -
Aed11g0259 221 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Aed11g0259 221 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Aed11g0259 221 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Aed11g0259 221 SUPERFAMILY RmlC-like cupins 26 218 IPR011051 -
Aed11g0259 221 SMART Cupin_1_3 63 213 IPR006045 -
Aed11g0259 221 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
Aed11g0259 221 CDD cupin_OxOx 26 219 - -
Aed11g0259 221 Gene3D Jelly Rolls 25 221 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0259 Aed-Chr11 2139505 2140170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0259 26 216 Miscellaneous Gene Families AT3G05930 41.361 4.89e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0259 - - gmx:100811231 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0259 11 2139505 2140170 Aed11g0259 11 2139505 2140170 ECH