Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0249 ATGAAACCGTACCTTTCTTCATTCCTACTACTCCTTCTTCTCCTTCTCAACCAATCCCTTTCGGCCACCGCTGGTTTCCCACTTGGTCCTATCATGAAAGGAATTACCAAGGGGCTGAGGAACGGTGGCGGAAAAGAGATAGCCAAAGATTTGGTGAATTACTTGAATATCACACAACAGTCCTCTCCCCAACCGCCAGACGCATCACCGGAGCTGATCCAAGGCCTGTATCGTATCAAACAGTATTTGAACAACTACGGCTACCTCCAATCCTCCGCGTCGGAGTTCAACGATAGTTTGGACCGCGAAACAAGGTCAGCCATTCAGTCCTACCAGAAGTTTTTCAATCTTGAAGTCACCGGCGACCTAAACAACAACCAGACTCTTGAGCACCTCTCGTACCTACGATGCGCTGTTCCCGACGTTAATATCCAGTACAACTTCACCGACAGCAACGGGTCGTGGCCGAAAGCCGGTAACCGGTGGTTCCGCAACACAAACCTCACCTACGGTTTTCACCCGGATAGCCAAATCCCGGAAAACATGACGAAGTTGTTCAGAGATTCCTTCACGCAATGGGCCCAGGCCTCGGGGGTTTTGAATCTCACGGAGACAACCTACGACAACGCCAACATCCAGGTAGGGTTCTACAATTTCACATCCATGGGAATTGAAGTGGAAGTGTATGGTGGCAGCATTATATCATTGCAGCCCCCTTCCAATGCCACGACAGGGGTGTTGCTTCTCGACGGTGCCAGTATGTCGTGGGCGCTGCCGAGCGAAAACGACAGTCTGTCGTGGGAGGATGGAGTTTTGGACTTGGAGAGTGCCGCGATGCATCAGATAGGGCATTTACTTGGACTTGACCATTCTTCCATGAATGACTCTGTCATGTACCCTTATATTTTGCCATCGCAGCAACGGAAGGTGGAGCTCTCGGTTTCTGACAAGGAGAACATTCAGCAACAGTATATTACCAACAACGGCAACGCTGGCCACGGTGGCCGTTGGGGAGTGCTTTCAGTTACCACTTTCTCTCTCGGGTTTGCTTACGTACTGCTTCTTTTGTATTAG 1074 0.5028 MKPYLSSFLLLLLLLLNQSLSATAGFPLGPIMKGITKGLRNGGGKEIAKDLVNYLNITQQSSPQPPDASPELIQGLYRIKQYLNNYGYLQSSASEFNDSLDRETRSAIQSYQKFFNLEVTGDLNNNQTLEHLSYLRCAVPDVNIQYNFTDSNGSWPKAGNRWFRNTNLTYGFHPDSQIPENMTKLFRDSFTQWAQASGVLNLTETTYDNANIQVGFYNFTSMGIEVEVYGGSIISLQPPSNATTGVLLLDGASMSWALPSENDSLSWEDGVLDLESAAMHQIGHLLGLDHSSMNDSVMYPYILPSQQRKVELSVSDKENIQQQYITNNGNAGHGGRWGVLSVTTFSLGFAYVLLLLY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0249 357 SMART col_5 158 326 IPR006026 GO:0006508|GO:0008237|GO:0008270
Aed11g0249 357 Gene3D Collagenase (Catalytic Domain) 69 330 IPR024079 GO:0008237
Aed11g0249 357 PRINTS Matrixin signature 312 325 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aed11g0249 357 PRINTS Matrixin signature 277 302 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aed11g0249 357 PRINTS Matrixin signature 132 145 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aed11g0249 357 PANTHER MATRIX METALLOPROTEINASE 71 328 - -
Aed11g0249 357 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 160 324 - -
Aed11g0249 357 Pfam Matrixin 161 324 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Aed11g0249 357 Pfam Putative peptidoglycan binding domain 78 126 IPR002477 -
Aed11g0249 357 PANTHER MATRIXIN PROTEIN 71 328 - -
Aed11g0249 357 SUPERFAMILY PGBD-like 74 142 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0249 Aed-Chr11 2075472 2076545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0249 - - gmx:548001 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0249 11 2075472 2076545 Aed11g0249 11 2075472 2076545 ECH