Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0039 ATGATAGCACAGGGATTTGAGGATGAAGAGAAATGGCTCGCCGAGGGTATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTCGACGATAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCGGAGCTTCGAACTTCCAGGCTCTCACCCCACAAATACTACGATCTCTATATGAGAGCCTTCGATGAGCTTCGGAGGCTGGAGATTTTCTTCAAAGACGAAACCAGACACGGCGTTTCCATAGTTGATCTCTACGAACTTGTTCAGCACGCTGGAAATATATTGCCTAGAATGTATCTCCTTTGCACGGTAGGATCCGTTTATCTGAGATGCAAGGATGCTCCGGTAAAGGATGTTCTTAAAGATCTAGTGGAAATGTGTCGCGCCGTTCAACATCCAATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGACAAGTTGCCTGATATTGGCTATGATAATGAAAAGGGGGAATCTAATAGTGTGATGGATTCAGTTGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGTGTTATGGTGCTTGTGAATCATGCTTAATCTTTGGCGATCCTGAGCTGAGGCCTTCAATTGGGCTTTCTGGTCTGCAGGGACCCGGTCGGATAAGAGAGAAGAGGGAAAAAGAAAGGAATGAGCTTCGTGATCTTGTAGGGAAAAATCTACATGTTCTGAGTCAGATAGAGGGCGTGGACCTTGAGATGTACAAAGACACCGTCCTTCCAAGTGTCTTAGAGCAGGTTGTCAATTGCAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTGTTTCCAGATGAGTACCATTTGCAGACACTTGAGACTCTGTTAGGTGCTTGCCCTCAATTGCAGCCCACAGTAGACATCAAAACAGTGTTATCTCAGTTAATGGACAGGTTGTCAAATTATGCTGCATCAAGTACTGAAGTATTGCCTGAATTTCTGCAAGTGGAGGCATTTACCAAACTGAGCACGGCAATAGGCAGGGTGATAGAAGCACAAGTTGACATGCCTATTGTGGGTGCAATAGCTTTGCATGTTTCTCTCCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGGGATCATGTGTCAAGAAGCTTTCTGGAAAACCGAAGCTTGATGACAATAGAGCAACAAAGCAAGTTGTTGCACTTTTAAGTGCTCCACTTGATAAATACAATGATATTGTGACTGCCCTGACACTTTCCAATTATCCTCGTGTAATGGATCATCTAGATTATGAAACAAATAAAGTCATGGCCATGGTTATTATTCAAAGTATTATGAAGAATAACACTTGCATCTCTACTGCCGACAAGGTTGAAGTTTTATTTGAATTAATCAAAGGGCTTATAATAGACTTGGATGGAACAGCTGAAGATGAGGTTGATGAAGAAGATTTCAACGAGGAACAAAATTCTGTCGCTCGCCTCATACACATGCTTCATAATGATGAACCAGAGGAAATGTTTAAGATAATATGTACAGTAAAGAAGCATATTATGTGTGGAGGACCAAAGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAGGTTGATCAGGCAATTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCTACAACACCAAAAAAAATATTTCAGCTTTTAAATGAGATAATTGAAGCTCTTTCTTCTGTATCGTCTCCTGAGCTGGCCCTGAGACTATATCTGCAATGTGCTGAGGCTGCTAATGACTGTGACCTTGAGCCTGTTGCTTACGAATTTTTCACTCAGGCATTTGTATTATATGAAGAGGAAATTGCGGACTCTAAAGCCCAGGTAACTGCAATACATTTAATCATCGGGTCTCTTCAGAAAATGAACGTCTTTGGCATTGAGAACAGGGATACATTAACACACAAGGCCACAGGGTATTCAGCGAAGCTTTTGAAGAAACCTGATCAGTGCCGAGCAGTTTATGCATGCTCTCATCTCTTTTGGGTTGATGATCAAGTTGGTGATAAAGATGGAGAAAGGGTATTGCTTTGCCTTAAGCGTGCTTTGAGGATTGCAAATGCTGCTCAACAAATGGCCAATGTAGCAAGGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAAGTACATTTACTATTTTGAGAAAGGAAACCCGCAGATAACTAGTTCTACTATTCAGGGGCTTATAGAATTGATCACGACGGAGATGCAGAGTGACTCTGCATCAGCTCTTCCAGCTTCAGATGCCTTTTTCACCGGCACATTAAGGTACATCCAATTCCAAAAACAGAAGGGTGGTATACTGGGTGAAAAATATGATCCCATCAAGGTCTCAGTCCCTGCCTAA 2460 0.4248 MIAQGFEDEEKWLAEGIAGIQHNAFFMHRALDDNNLRDALKYSAQMLSELRTSRLSPHKYYDLYMRAFDELRRLEIFFKDETRHGVSIVDLYELVQHAGNILPRMYLLCTVGSVYLRCKDAPVKDVLKDLVEMCRAVQHPIRGLFLRSYLSQVSKDKLPDIGYDNEKGESNSVMDSVEFVLQNFTEMNKLWVRLQCYGACESCLIFGDPELRPSIGLSGLQGPGRIREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKDTVLPSVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSQLMDRLSNYAASSTEVLPEFLQVEAFTKLSTAIGRVIEAQVDMPIVGAIALHVSLLTFTLRVHPDRLDYVDQVLGSCVKKLSGKPKLDDNRATKQVVALLSAPLDKYNDIVTALTLSNYPRVMDHLDYETNKVMAMVIIQSIMKNNTCISTADKVEVLFELIKGLIIDLDGTAEDEVDEEDFNEEQNSVARLIHMLHNDEPEEMFKIICTVKKHIMCGGPKRLPFTVPSLIFSALRLIRQLQGQDGDIVGEEVPTTPKKIFQLLNEIIEALSSVSSPELALRLYLQCAEAANDCDLEPVAYEFFTQAFVLYEEEIADSKAQVTAIHLIIGSLQKMNVFGIENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQVGDKDGERVLLCLKRALRIANAAQQMANVARGSSGPVTLFVEILNKYIYYFEKGNPQITSSTIQGLIELITTEMQSDSASALPASDAFFTGTLRYIQFQKQKGGILGEKYDPIKVSVPA 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0039 819 PIRSF Retromer_Vps35 2 817 IPR005378 GO:0015031|GO:0030906|GO:0042147
Aed11g0039 819 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 221 815 - -
Aed11g0039 819 Pfam Vacuolar protein sorting-associated protein 35 12 772 IPR005378 GO:0015031|GO:0030906|GO:0042147
Aed11g0039 819 Gene3D - 491 800 IPR042491 -
Aed11g0039 819 PANTHER VACUOLAR SORTING PROTEIN 35 221 815 IPR005378 GO:0015031|GO:0030906|GO:0042147
Aed11g0039 819 PANTHER VACUOLAR SORTING PROTEIN 35 2 199 IPR005378 GO:0015031|GO:0030906|GO:0042147
Aed11g0039 819 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0039 Aed-Chr11 261424 269104 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0039 K18468 - gmx:100778365 1476.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0039 11 261424 269104 Aed11g0039 11 261424 269104 ECH