Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2019 ATGGCTTCCTCGGAGATCGAGGTGGTTTCATCATCGTCGGTCTCCAAACCCATCGACCAGCCTCCAATCCTCGACGTCTTCACCGCCTCTGCTCACGGCGACTTCGACAAATTGAGAACCTTCGTCGAACAAGACGGTGCCTCCGTCTCTGTTCCCGATTTCAATGGCTATTACGCTCTTCAATGGGCCTCGCTCAACAACTTCCACAACATTGCGCACTATCTCATTCAGCATGGGGCGGATGTGAATGCTAAAGACAACATGCAACAAACGGCATTGCACTGGGCCGCGGTTCGTGGTTCAACTCTAGCTTCTGATGTTCTTGTGGAGAATGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGACAGACAGCTTTCTTAAATCACATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACACCGTTGCACTGGGCTGCATTAAGAGGAAATGCAGAGGCATGTGCTGTGCTTGTACATGCAGGCACAAAGGAAGAACTGATGGTAAAGGACAATGTTGGGAACACACCTGTACAACTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTTTCAAATCAACAACGGGCTCATAGCAACTTCTGGAAAGGGAAACTGTGTAGTGGGATGGTGACAGATATTGGTTATGCTCCCATCTTATTCTGTACTATAACCTTTCTCACGATCCTCTTCATTAACTCAGTTGTTGCAGCTCCTAGCCTTAAAAAGATTACTGCCGTTGTTGGACTTTGGGCATGGACGGCGCTTTCTACGTCATTTGGTTCCCTGATTATGTTCTATAAGTGTAGTAGTAAAGATCCTGGTTATGTAAAACGGCCGGGAGACTTAGGTACTCAAAGTGATACAGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGCTGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATTAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTGGAACAGTTCGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCTTGGGAACTTTGACTTCTTCCATTTCTGGTGCTGTTGCAGTTCAAAGAAATGATAGTGTCATCTACGGAGAAAGAGACAAGTTCTGTATTTGTTTACCTTTCTCCATAACTGAAAGGTCACCTTCAGGAAAAGGAGATTCACGAATGATAGCTCGAAATGTGACGACAAATGAACTAGCAAATTCCTCCCGCTATGATTATCTTCGTGGTCCTGATGGGCGGTTTAGAAACCCATATAACCGCGGCCGTTGGAAGAATTGTGCTGACTTCCTATTTCTGGGCTATACAAATGATGATGAGATTGCTTGGCCTCCATTACAGCAGGTGGCAACTTAG 1572 0.4478 MASSEIEVVSSSSVSKPIDQPPILDVFTASAHGDFDKLRTFVEQDGASVSVPDFNGYYALQWASLNNFHNIAHYLIQHGADVNAKDNMQQTALHWAAVRGSTLASDVLVENGARVEAADVNGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNAEACAVLVHAGTKEELMVKDNVGNTPVQLAYDKGHRHVAPFLSNQQRAHSNFWKGKLCSGMVTDIGYAPILFCTITFLTILFINSVVAAPSLKKITAVVGLWAWTALSTSFGSLIMFYKCSSKDPGYVKRPGDLGTQSDTEDPLLNIDLNSSSVWLGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSISGAVAVQRNDSVIYGERDKFCICLPFSITERSPSGKGDSRMIARNVTTNELANSSRYDYLRGPDGRFRNPYNRGRWKNCADFLFLGYTNDDEIAWPPLQQVAT 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2019 523 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Aed10g2019 523 ProSiteProfiles Ankyrin repeat region circular profile. 188 212 - -
Aed10g2019 523 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 513 - -
Aed10g2019 523 Pfam DHHC palmitoyltransferase 362 433 IPR001594 GO:0016409
Aed10g2019 523 Gene3D - 193 246 IPR036770 -
Aed10g2019 523 SUPERFAMILY Ankyrin repeat 26 245 IPR036770 -
Aed10g2019 523 Gene3D - 23 141 IPR036770 -
Aed10g2019 523 ProSiteProfiles Ankyrin repeat region circular profile. 55 87 - -
Aed10g2019 523 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Aed10g2019 523 ProSiteProfiles Ankyrin repeat profile. 188 220 IPR002110 GO:0005515
Aed10g2019 523 ProSiteProfiles Ankyrin repeat region circular profile. 88 119 - -
Aed10g2019 523 Pfam Ankyrin repeats (many copies) 179 231 IPR002110 GO:0005515
Aed10g2019 523 Pfam Ankyrin repeat 155 176 IPR002110 GO:0005515
Aed10g2019 523 ProSiteProfiles Ankyrin repeat region circular profile. 155 181 - -
Aed10g2019 523 ProSiteProfiles Ankyrin repeat profile. 121 154 IPR002110 GO:0005515
Aed10g2019 523 Gene3D - 142 192 IPR036770 -
Aed10g2019 523 ProSiteProfiles DHHC domain profile. 362 412 - -
Aed10g2019 523 Pfam Ankyrin repeats (3 copies) 29 118 IPR002110 GO:0005515
Aed10g2019 523 PANTHER - 3 513 - -
Aed10g2019 523 ProSiteProfiles Ankyrin repeat profile. 55 87 IPR002110 GO:0005515
Aed10g2019 523 SMART ANK_2a 88 117 IPR002110 GO:0005515
Aed10g2019 523 SMART ANK_2a 223 252 IPR002110 GO:0005515
Aed10g2019 523 SMART ANK_2a 55 84 IPR002110 GO:0005515
Aed10g2019 523 SMART ANK_2a 188 217 IPR002110 GO:0005515
Aed10g2019 523 SMART ANK_2a 155 184 IPR002110 GO:0005515
Aed10g2019 523 SMART ANK_2a 121 151 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2019 Aed-Chr10 24164392 24177021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2019 42 235 Miscellaneous Gene Families AT1G05640 28.500 2.42e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2019 K20032 - gmx:100807263 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2019 10 24164392 24177021 Aed10g2019 10 24164392 24177021 ECH