Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1226 ATGTCGGGAAAAGGGGCGAAGGGGTTGATCACCGGCAAAACCTCCGCCGCCGCCGCCGCCAACAAAGACAAGGACAAGAAGAAACCCATTTCGCGTTCTTCTCGCGCCGGCCTCCAGTTCCCAGTTGGCCGAATCCACCGGCTTTTGAAGTCAAGGACAACCTCTAATGGTAGAGTTGGGGCCACAGCTGCTGTCTACTCTGCCGCTATCTTGGAGTATCTAACTGCTGAAGTATTGGAGCTGGCAGGGAATGCTAGCAAGGATCTCAAGGTCAAACGTATTACTCCCCGGCATTTACAGCTAGCCATTCGTGGGGACGAAGAGTTGGATACCCTGATAAAAGGAACAATTGCTGGAGGTGGTGTGATTCCTCACATTCACAAGTCTCTTATCAACAAGTCTTCCAAGGAGTAG 414 0.5193 MSGKGAKGLITGKTSAAAAANKDKDKKKPISRSSRAGLQFPVGRIHRLLKSRTTSNGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1226 137 Pfam Core histone H2A/H2B/H3/H4 14 105 IPR007125 GO:0003677
Aed10g1226 137 PANTHER HISTONE H2A 2 136 - -
Aed10g1226 137 SMART h2a4 17 137 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed10g1226 137 Gene3D Histone, subunit A 17 137 IPR009072 GO:0046982
Aed10g1226 137 PRINTS Histone H2A signature 28 50 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed10g1226 137 PRINTS Histone H2A signature 87 101 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed10g1226 137 PRINTS Histone H2A signature 114 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed10g1226 137 PRINTS Histone H2A signature 73 86 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed10g1226 137 PRINTS Histone H2A signature 58 73 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed10g1226 137 PANTHER HISTONE H2A 2 136 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed10g1226 137 Pfam C-terminus of histone H2A 107 136 IPR032454 -
Aed10g1226 137 MobiDBLite consensus disorder prediction 1 37 - -
Aed10g1226 137 CDD H2A 29 133 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed10g1226 137 ProSitePatterns Histone H2A signature. 36 42 IPR032458 -
Aed10g1226 137 SUPERFAMILY Histone-fold 19 114 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1226 Aed-Chr10 12177216 12180502 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1226 K11251 - mnt:21408321 253.062